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mad_match.c
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mad_match.c
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#include "madx.h"
// private interface
static void
match_prepare_varypos(void)
/* keeps constraints from nodes, reexpands, adds constraints to nodes */
{
struct node* node = current_sequ->ex_start;
struct constraint_list** tmplist = mymalloc("match_prepare_varypos", current_sequ->n_nodes * sizeof *tmplist);
int i = 0;
while (node != NULL) {
tmplist[i] = current_sequ->all_nodes[i]->cl; i++;
if (node == current_sequ->ex_end) break;
node = node->next;
}
expand_curr_sequ(0);
i = 0;
node = current_sequ->ex_start;
while (node != NULL) {
current_sequ->all_nodes[i]->cl = tmplist[i]; i++;
if (node == current_sequ->ex_end) break;
node = node->next;
}
myfree("match_prepare_varypos", tmplist);
}
static void
mtjacprint(int m, int n,double* jac,struct in_cmd* cmd)
{
int i,j,k,l,t;
double *SV,*U,*VT;
double tmp;
char *knobfilename, *jacfilename;
FILE *knobfile=NULL, *jacfile=NULL;
k=0;
l=0;
jacfilename=command_par_string("jacfile",cmd->clone);
knobfilename=command_par_string("knobfile",cmd->clone);
if (jacfilename) jacfile=fopen(jacfilename,"w");
fprintf(prt_file, "\n\nJACOBIAN:\n");
fprintf(prt_file, "%4s %16s %10s %20s\n","Node","Constraint","Variable","Derivative");
fprintf(prt_file, "---------------------------------------------------------------\n");
for(i=0;i<MAX_MATCH_MACRO;i++)
{
if (match2_macro_name[i]==NULL) break;
for(j=0;j<MAX_MATCH_CONS;j++)
{
if (match2_cons_name[i][j]==NULL) break;
if ( strcmp(match2_cons_name[i][j],"0")!=0 )
if (jacfilename)
fprintf(jacfile, "%16s:=%+20.10e",match2_cons_name[i][j],match2_cons_value[i][j]);
for(l=0;l<n;l++)
{
fprintf(prt_file, "%4s ",match2_macro_name[i]);
fprintf(prt_file, "%16s ",match2_cons_name[i][j]);
fprintf(prt_file, "%10s ",command_par_string("name",stored_match_var->commands[l]));
fprintf(prt_file, "%20.10e",jac[l*m+k]);
fprintf(prt_file, "\n");
if (jacfilename) if ( strcmp(match2_cons_name[i][j],"0")!=0 )
fprintf(jacfile, "%+20.10e*%16s",jac[l*m+k],
command_par_string("name",stored_match_var->commands[l]));
}
if (jacfilename) if ( strcmp(match2_cons_name[i][j],"0")!=0 )
fprintf(jacfile, ";\n");
k++;
}
}
if (jacfilename) fclose(jacfile);
fprintf(prt_file, "\n\nSINGULAR VALUE DECOMPOSITION:\n");
SV = mymalloc_atomic("match_match", (total_const+total_vars) * sizeof *SV);
VT = mymalloc_atomic("match_match", (total_vars *total_vars) * sizeof *VT);
U = mymalloc_atomic("match_match", (total_const*total_const) * sizeof *U );
mtsvd_(&total_const,&total_vars,jac,SV,U,VT);
k=0;
l=0;
fprintf(prt_file, "%-25s %12s %-34s\n",
"Variable vector","---> Sing. val.","* Node constraint vector");
fprintf(prt_file, "--------------------------------------------------------------------\n");
for(i=0;i<imax(n,m);i++){
for(j=0;j<imax(n,m);j++){
if ( (i<n)&&(j<n)) {
fprintf(prt_file, "%-12s",command_par_string("name",stored_match_var->commands[j]));
fprintf(prt_file, "%12.5g ",VT[j*n+i]);
}
else { fprintf(prt_file, "%24s",""); }
if ( (i<imin(n,m)) &&(j==0)) {
fprintf(prt_file, "%12.5g ",SV[i]);
}
else { fprintf(prt_file, "%12s ",""); }
if ( (i<m)&&(j<m) ) {
if (match2_cons_name[k][l]==NULL) {
k++;
l=0;
}
/* fprintf(prt_file, "%i %i",k,l);*/
fprintf(prt_file, "%12.5g ",U[i*m+j]);
/* fprintf(prt_file, "%10s ",match2_macro_name[k]);*/
fprintf(prt_file, "%10s ",match2_cons_name[k][l]);
l++;
}
else { fprintf(prt_file, "%22s",""); }
fprintf(prt_file, "\n");
}
l=0;
k=0;
fprintf(prt_file, "\n");
fprintf(prt_file, "\n");
}
/* Print knob file */
if (knobfilename) {
knobfile=fopen(knobfilename,"w");
k=0;
l=0;
for(i=0;i<n;i++){
k=0; l=0;
fprintf(knobfile, "%-12s := %+15.8e ",
command_par_string("name",stored_match_var->commands[i]),
get_variable(command_par_string("name",stored_match_var->commands[i])));
for(j=0;j<m;j++){
if (match2_cons_name[k][l]==NULL) { k++; l=0; }
/* Compute M-1=V SV-1 UT*/
/* M-1[i,j] = sum_t^min(m,n) V[i,t] / SV[t] * U[j,t] ) */
/* = sum_t^min(m,n) VT[t,i] / SV[t] * U[j,t] ) */
/* in fortran M[i,j]=M[i+j*n] */
tmp=0;
for(t=0;t<imin(m,n);t++) {
if (SV[t]>jac_cond) { tmp+=VT[t+n*i]/SV[t]*U[j+t*m]; }
/* fprintf(prt_file,"VT %d,%d,%12.5e ",t,i,VT[t+n*i]);*/
/* fprintf(prt_file,"SV %d,%12.5e ",t,SV[t]);*/
/* fprintf(prt_file,"U %d,%d,%12.5e\n",j,t,U[j+t*m]);*/
}
/* fprintf(prt_file,"M-1 %d,%d,%e \n",i,j,tmp);*/
if ( strcmp(match2_cons_name[k][l],"0")!=0 ) {
fprintf(knobfile, "%+15.8e*%s",tmp,match2_cons_name[k][l]);
};
l++;
}
fprintf(knobfile, ";\n");
}
fclose(knobfile);
}
myfree("match_match", SV);
myfree("match_match", VT);
myfree("match_match", U);
}
static void
match_action(struct in_cmd* cmd)
{
int i;
int iseed, iprint;
int izero = 0;
int local_calls;
int local_call_lim;
if (match_is_on == kMatch_PTCknobs)
{
madx_mpk_run(cmd);
return;
}
if (stored_match_var->curr == 0)
{
warning("no vary command seen,","match command terminated");
match_is_on = 0;
set_option("match_is_on", &izero);
return;
}
total_vars = stored_match_var->curr;
penalty = zero;
match_calls = command_par_value("calls", cmd->clone);
match_tol = command_par_value("tolerance", cmd->clone);
fprintf(prt_file, "number of variables: %d\n", total_vars);
fprintf(prt_file, "user given constraints: %d\n", comm_constraints->curr);
fprintf(prt_file, "total constraints: %d\n\n", total_const);
vary_vect = new_double_array(total_vars);
vary_dvect = new_double_array(total_vars);
fun_vect = new_double_array(total_const);
current_call_lim += match_calls;
local_call_lim = command_par_value("calls", cmd->clone);
local_calls = 0;
if (strcmp(cmd->tok_list->p[0], "lmdif") == 0 && total_vars > total_const)
{
print_match_summary = 0;
warning("number of variables larger than number of constraints:", "match command ignored");
return;
}
else if (strcmp(cmd->tok_list->p[0], "lmdif") == 0 && total_vars <= total_const)
{
print_match_summary = 1;
match_work[0] = new_double_array(total_vars);
match_work[1] = new_double_array(total_vars*total_const);
match_work[2] = new_double_array(total_vars);
match_work[3] = new_double_array(total_vars);
match_work[4] = new_double_array(total_vars);
match_work[5] = new_double_array(total_vars);
match_work[6] = new_double_array(total_vars);
match_work[7] = new_double_array(total_const);
match_work[8] = new_double_array(total_const);
match_work[9] = new_double_array(total_vars);
fprintf(prt_file, "START LMDIF:\n\n");
mtlmdf_(&total_const, &total_vars,
&match_tol, &local_calls, &local_call_lim,
vary_vect->a, vary_dvect->a, fun_vect->a, match_work[0]->a,
match_work[1]->a, match_work[2]->a, match_work[3]->a,
match_work[4]->a, match_work[5]->a, match_work[6]->a,
match_work[7]->a,match_work[9]->a);
}
else if (strcmp(cmd->tok_list->p[0], "jacobian") == 0)
{
print_match_summary = 0;
jac_strategy = command_par_value("strategy", cmd->clone);
jac_cool = command_par_value("cool", cmd->clone);
jac_repeat = command_par_value("repeat", cmd->clone);
jac_balance = command_par_value("balance", cmd->clone);
jac_random = command_par_value("random", cmd->clone);
jac_bisec = command_par_value("bisec", cmd->clone);
jac_cond = command_par_value("cond", cmd->clone);
match_work[0] = new_double_array(total_vars*total_const);
match_work[1] = new_double_array(total_const);
match_work[2] = new_double_array(total_const);
match_work[3] = new_double_array(total_vars);
match_work[4] = new_double_array(total_vars);
fprintf(prt_file, "START JACOBIAN:\n\n");
// size of arrays allocated in mtjac_
unsigned long mem_size = (2*total_const*total_vars + 1020 * (total_const+total_vars)) * sizeof(double);
if (mem_size > 8000000) {
fprintf(prt_file, "Problem size is too large (may cause stability problems): %d*%d (%lu bytes)\n\n", total_const, total_vars, mem_size);
// fatal_error("stack overflow will occur in fortran routines,","good bye");
}
mtjac_(&total_const, &total_vars,
&jac_strategy, &jac_cool,&jac_balance, &jac_random,
&jac_repeat,&jac_bisec,&jac_cond,&match_is_on,
&match_tol, &local_calls, &local_call_lim,
vary_vect->a, vary_dvect->a, fun_vect->a,
match_work[0]->a,match_work[1]->a,match_work[2]->a,
match_work[3]->a,match_work[4]->a);
/* if (jac_strategy==2 && match_is_on==2) {*/
if (jac_strategy==2) {
mtjacprint(total_const,total_vars,match_work[0]->a,cmd);
}
}
else if (strcmp(cmd->tok_list->p[0], "migrad") == 0 && total_vars <= total_const)
{
print_match_summary = 1;
mig_strategy = command_par_value("strategy", cmd->clone);
match_work[0] = new_double_array(total_vars*total_vars);
match_work[1] = new_double_array(7*total_vars);
match_work[2] = new_double_array(total_vars);
match_work[3] = new_double_array(total_vars);
match_work[4] = new_double_array(total_vars);
match_work[5] = new_double_array(total_vars*total_vars);
match_work[6] = new_double_array(total_vars);
match_work[7] = new_double_array(total_vars);
fprintf(prt_file, "START MIGRAD:\n\n");
mtmigr_(&total_const, &total_vars, &mig_strategy,
&match_tol, &local_calls, &local_call_lim,
vary_vect->a, vary_dvect->a, fun_vect->a,
match_work[0]->a, match_work[1]->a, match_work[2]->a,
match_work[3]->a, match_work[4]->a, match_work[5]->a,
match_work[6]->a, match_work[7]->a);
}
else if (strcmp(cmd->tok_list->p[0], "simplex") == 0)
{
print_match_summary = 1;
match_work[0] = new_double_array(total_vars*(total_vars+1));
match_work[1] = new_double_array(total_vars+1);
match_work[2] = new_double_array(4*total_vars);
fprintf(prt_file, "START SIMPLEX:\n\n");
mtsimp_(&total_const, &total_vars,
&match_tol, &local_calls, &local_call_lim,
vary_vect->a, vary_dvect->a, fun_vect->a,
match_work[0]->a, match_work[1]->a, match_work[2]->a);
}
else if (strcmp(cmd->tok_list->p[0], "siman") == 0)
{
print_match_summary = 1;
iseed = 1;
iprint = 0;
match_work[0] = new_double_array(total_vars+1);
match_i_work[1] = new_int_array(total_vars+1);
match_work[2] = new_double_array(total_vars+1);
match_work[3] = new_double_array(total_vars+1);
match_work[4] = new_double_array(total_vars+1);
match_work[5] = new_double_array(total_vars+1);
match_work[6] = new_double_array(total_vars+1);
fprintf(prt_file, "START SIMAN:\n\n");
mtsa_(&total_const, &total_vars,
&match_tol, &local_calls, &local_call_lim,
vary_vect->a, fun_vect->a,&iseed,&iprint,
match_work[0]->a, match_i_work[1]->i, match_work[2]->a,
match_work[3]->a, match_work[4]->a, match_work[5]->a,
match_work[6]->a);
}
for (i = 0; i < MATCH_WORK; i++)
match_work[i] = delete_double_array(match_work[i]);
}
#if 0 // not used...
static void
match_cell(struct in_cmd* cmd)
{
(void)cmd;
}
#endif
// if negative, cycle at high boundary and clamp in interval [lo, hi)
static int
cclamp(int num, int lo, int hi)
{
if (num < 0) num += hi;
if (num < lo) num = lo;
if (num >= hi) num = hi-1;
return num;
}
static void
match_constraint(struct in_cmd* cmd)
{
struct node* c_node;
if(match_is_on==2)
{
match2_constraint(cmd);
}
else if (match_is_on == kMatch_PTCknobs)
{
madx_mpk_addconstraint(in->buffers[in->curr]->c_a->c);
}
else
{ /* old match */
double index = command_par_value("iindex", cmd->clone);
comm_constraints->curr=0;
fill_constraint_list(1, cmd->clone, comm_constraints);
struct select_iter* it = start_iter_select(cmd->clone, match_sequs, NULL);
while (fetch_node_select(it, &c_node, NULL)) {
int num_slice = c_node->interp_at ? c_node->interp_at->curr : 1;
int x = cclamp(index, 0, num_slice);
update_node_constraints(c_node, comm_constraints, x);
}
}
}
static void
match_couple(struct in_cmd* cmd)
{
(void)cmd;
}
static void
match_end(struct in_cmd* cmd)
{
int i;
struct node* c_node;
int izero = 0;
int ione = 1;
if (fun_vect == NULL )
{
fprintf(prt_file, "WARNING: No matching method selected.\n");
return;
}
if (match_is_on==kMatch_UseMacro) {
match2_end(cmd);
return;
}
if (match_is_on == kMatch_PTCknobs) {
madx_mpk_end();
return;
}
/* write out all final constraint values and vary parameters */
penalty = zero;
if (get_option("varylength") != zero) match_prepare_varypos();
pro_twiss();
current_const = 0;
fprintf(prt_file, "\n");
fprintf(prt_file, "MATCH SUMMARY\n\n");
fprintf(prt_file, "Node_Name Constraint Type Target Value Final Value Penalty\n");
fprintf(prt_file, "--------------------------------------------------------------------------------------------------\n");
print_match_summary = 1;
set_option("match_summary", &print_match_summary);
set_option("chrom_match", &ione);
for (i = 0; i < match_num_seqs; i++)
{
current_twiss = local_twiss[i]->clone;
pro_twiss();
if (twiss_success && print_match_summary == 1)
{
collect_(¤t_const, &penalty, fun_vect->a);
}
}
fprintf(prt_file, "\n\n");
fprintf(prt_file, "Final Penalty Function = %16.8e\n\n",penalty);
fprintf(prt_file, "\n\n");
/* fprintf(prt_file, "Variable Final Value Lower Limit Upper Limit\n");*/
/* fprintf(prt_file, "-------------------------------------------------------------------------------\n");*/
/* if ((print_match_summary == 1) && vary_vect )*/
/* {*/
/* |+ drop first int* passed variable mtgetc_(&stored_match_var->curr, vary_vect->a, vary_dvect->a); +|*/
/* mtgetc_(vary_vect->a, vary_dvect->a); |+ mtgeti->mtgetc +|*/
/* }*/
/* fprintf(prt_file, "\n");*/
match2_print_var(cmd);
fprintf(prt_file, "END MATCH SUMMARY\n\n");
print_match_summary = 0;
set_option("match_summary", &print_match_summary);
set_option("chrom_match", &izero);
i = 0; set_option("match_local", &i); /* flag */
/* End summary of matching job */
for (i = 0; i < match_num_seqs; i++)
{
c_node = match_sequs->sequs[i]->ex_start;
while(c_node != NULL) /* drop all constraint lists at nodes */
{
if (c_node->cl) c_node->cl = delete_constraint_list(c_node->cl);
if (c_node == match_sequs->sequs[i]->ex_end) break;
c_node = c_node->next;
}
}
current_gweight = delete_command(current_gweight);
current_weight = delete_command(current_weight);
for (i = 0; i < comm_constraints->curr; i++)
delete_constraint(comm_constraints->constraints[i]);
for (i = 0; i < sequences->curr; i++)
{
if (sequences->sequs[i]->cl != NULL) sequences->sequs[i]->cl
= delete_constraint_list(sequences->sequs[i]->cl);
}
vary_vect = delete_double_array(vary_vect);
vary_dvect = delete_double_array(vary_dvect);
fun_vect = delete_double_array(fun_vect);
comm_constraints->curr = 0;
stored_match_var = delete_command_list(stored_match_var);
for (i = 0; i < match_num_seqs; i++) if (local_twiss[i])
{
if (local_twiss[i]->clone) delete_command(local_twiss[i]->clone);
local_twiss[i] = delete_in_cmd(local_twiss[i]);
}
vary_cnt = 0;
match_is_on = 0;
set_option("match_is_on", &izero);
match_sequs->curr = 0;
match_sequs->list->curr = 0;
current_call_lim = 0;
current_calls = 0;
total_const = 0;
set_option("twiss_print", &keep_tw_print);
fprintf(prt_file, "VARIABLE \"TAR\" SET TO %16.8e\n",penalty);
/* sprintf(assign_cmd,"tar= %16.8e ;",penalty);*/
/* pro_input(assign_cmd);*/
set_variable("tar",&penalty);
}
static void
match_fix(struct in_cmd* cmd)
{
(void)cmd;
}
static void
match_global(struct in_cmd* cmd)
{
struct sequence* sequ;
int n, low, up;
const char* name = command_par_string_user("sequence", cmd->clone);
if(name) /* sequence specified */
{
for (n = 0; n < match_sequs->curr; n++)
{
if (strcmp(name, match_sequs->sequs[n]->name) == 0) break;
}
if (n == match_sequs->curr)
{
warning(name," :sequence not selected by MATCH, skipped");
return;
}
low = up = n;
}
else
{
low = 0; up = match_sequs->curr - 1;
}
for (n = low; n <= up; n++)
{
sequ = match_sequs->sequs[n];
if (sequ->cl == NULL) sequ->cl = new_constraint_list(10);
comm_constraints->curr=0;
fill_constraint_list(2, cmd->clone, comm_constraints);
update_sequ_constraints(sequ, comm_constraints);
}
print_match_summary = 1;
}
static void
match_gweight(struct in_cmd* cmd)
{
struct name_list* nl = cmd->clone->par_names;
struct command_parameter_list* plc = cmd->clone->par;
struct command_parameter_list* pl = current_gweight->par;
int j;
(void)cmd;
for (j = 0; j < pl->curr; j++)
{
if (nl->inform[j])
{
pl->parameters[j]->double_value = plc->parameters[j]->double_value;
pl->parameters[j]->expr = plc->parameters[j]->expr;
}
}
}
static void
match_level(struct in_cmd* cmd)
{
(void)cmd;
}
static void
match_match(struct in_cmd* cmd)
{
struct name_list* tnl; /* local name list for TWISS input definition */
double match_beta_value;
struct command* comm;
struct command_parameter* cp;
struct name_list* nl = cmd->clone->par_names;
struct sequence* sequ;
int i, j, pos, n, spos, tpos;
int izero = 0, ione = 1, slow;
char *dpp;
if (match_is_on)
{
warning("already inside match:", "ignored");
return;
}
set_option("match_is_on", &ione);
keep_tw_print = get_option("twiss_print");
set_option("twiss_print", &izero);
if(par_present("use_macro", cmd->clone)) {
match2_match(cmd);
return;
}
if(par_present("use_ptcknob", cmd->clone)) {
match_is_on = kMatch_PTCknobs;
madx_mpk_prepare();
return;
}
match_is_on = 1;
fprintf(prt_file, "START MATCHING\n\n");
if(command_par("sequence", cmd->clone, &cp)) /* sequence specified */
{
if ((n = cp->m_string->curr) > match_sequs->max)
{
warning("excess sequence names", "skipped");
n = match_sequs->max;
}
for (i = 0; i < n; i++)
{
if ((pos = name_list_pos(cp->m_string->p[i], sequences->list)) < 0)
warning("unknown sequence", "skipped");
else
{
if ((sequ = sequences->sequs[pos]) == NULL
|| sequ->ex_start == NULL)
{
warning(sequ->name," :sequence not active, match killed");
match_is_on = 0;
return;
}
match_sequs->sequs[match_sequs->curr++] = sequ;
add_to_name_list(sequ->name, 0, match_sequs->list);
}
}
if (match_sequs->curr == 0)
{
warning("no active sequence,","match killed");
match_is_on = 0;
return;
}
}
else {
match_sequs->sequs[match_sequs->curr++] = current_sequ;
add_to_name_list(current_sequ->name, 0, match_sequs->list);
}
i = command_par_value("vlength", cmd->clone);
set_option("varylength", &i);
/* START SLOW-CHECK */
slow = command_par_value("slow", cmd->clone);
set_option("slow_match", &slow);
/* END SLOW-CHECK */
/* START CHK-SEQ */
current_match = cmd->clone;
if(command_par("sequence", cmd->clone, &cp)) /* sequence specified */
{
match_num_seqs = cp->m_string->curr;
fprintf(prt_file, "number of sequences: %d\n", match_num_seqs);
for (i = 0; i < match_num_seqs; i++)
{
match_seqs[i] = buffer(cp->m_string->p[i]);
/* check if the specified sequence is defined */
if ((pos = name_list_pos(match_seqs[i], sequences->list)) > -1)
{
current_sequ = sequences->sequs[pos];
fprintf(prt_file, "sequence name: %s\n", current_sequ->name);
/* START defining a TWISS input command for each sequence */
local_twiss[i] = new_in_cmd(10);
local_twiss[i]->type = 0;
local_twiss[i]->clone = local_twiss[i]->cmd_def
= clone_command(find_command("twiss", defined_commands));
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("sequence", tnl);
local_twiss[i]->cmd_def->par->parameters[tpos]->string = match_seqs[i];
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
if (slow)
{
tpos = name_list_pos("save", tnl);
local_twiss[i]->cmd_def->par->parameters[tpos]->string = NULL;
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
}
/* END defining a TWISS input command for each sequence */
}
else
{
warning("unknown sequence ignored:", match_seqs[i]);
return;
}
}
}
else
{
/* START defining a TWISS input command for default sequence */
match_num_seqs = 1;
local_twiss[0] = new_in_cmd(10);
local_twiss[0]->type = 0;
local_twiss[0]->clone = local_twiss[0]->cmd_def
= clone_command(find_command("twiss", defined_commands));
tnl = local_twiss[0]->cmd_def->par_names;
tpos = name_list_pos("sequence", tnl);
local_twiss[0]->cmd_def->par->parameters[tpos]->string = current_sequ->name;
local_twiss[0]->cmd_def->par_names->inform[tpos] = 1;
if (slow)
{
tpos = name_list_pos("save", tnl);
local_twiss[0]->cmd_def->par->parameters[tpos]->string = NULL;
local_twiss[0]->cmd_def->par_names->inform[tpos] = 1;
}
/* END defining a TWISS input command for default sequence */
}
if (current_sequ == NULL || current_sequ->ex_start == NULL)
{
warning("MATCH called without active sequence,", "ignored");
return;
}
/* END CHK-SEQ */
for (i = 0; i < match_num_seqs; i++)
{
for (j = 0; j < local_twiss[i]->cmd_def->par->curr; j++)
{
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("sequence", tnl);
if (slow) spos = name_list_pos("save", tnl);
else spos = -1;
if (j != tpos && j != spos)
local_twiss[i]->cmd_def->par_names->inform[j] = 0;
}
}
/* START CHK-BETA-INPUT */
/* START CHK-BETA0 */
if(command_par("beta0", cmd->clone, &cp)) /* beta0 specified */
{
match_num_beta = cp->m_string->curr;
fprintf(prt_file, "number of beta0s: %d\n", match_num_beta);
for (i = 0; i < match_num_beta; i++)
{
match_beta[i] = buffer(cp->m_string->p[i]);
fprintf(prt_file, "BETA0 name: %s\n", match_beta[i]);
/* START defining a TWISS input command for each sequence */
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("beta0", tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
local_twiss[i]->cmd_def->par->parameters[tpos]->string = match_beta[i];
/* END defining a TWISS input command for each sequence */
}
}
/* END CHK-BETA0 */
if(log_val("tapering", cmd->clone)){
for (i = 0; i < match_num_seqs; i++) {
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("tapering", tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
local_twiss[i]->cmd_def->par->parameters[tpos]->double_value = 1;
}
}
/* START CHK-RANGE */
if(command_par("range", cmd->clone, &cp)) /* range specified */
{
match_num_range = cp->m_string->curr;
for (i = 0; i < match_num_range; i++)
{
match_range[i] = buffer(cp->m_string->p[i]);
/* START adding range to TWISS input command for each sequence */
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("range", tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
local_twiss[i]->cmd_def->par->parameters[tpos]->string
= match_range[i];
/* END adding range to TWISS input command for each sequence */
}
}
/* END CHK-RANGE */
/* START CHK-USEORBIT */
if(command_par("useorbit", cmd->clone, &cp)) /* useorbit specified */
{
for (i = 0; i < cp->m_string->curr; i++)
{
/* START adding useorbit to TWISS input command for each sequence */
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("useorbit", tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
local_twiss[i]->cmd_def->par->parameters[tpos]->string
= buffer(cp->m_string->p[i]);
/* END adding range to TWISS input command for each sequence */
}
}
/* END CHK-USEORBIT */
/* START CHK-KEEPORBIT */
if(command_par("keeporbit", cmd->clone, &cp)) /* keeporbit specified */
{
for (i = 0; i < cp->m_string->curr; i++)
{
/* START adding keeporbit to TWISS input command for each sequence */
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("keeporbit", tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
local_twiss[i]->cmd_def->par->parameters[tpos]->string
= buffer(cp->m_string->p[i]);
/* END adding range to TWISS input command for each sequence */
}
}
/* END CHK-KEEPORBIT */
/* START CHK-R-MATRIX */
if(par_present("rmatrix", cmd->clone)) /* rmatrix specified */
{
for (i = 0; i < match_num_seqs; i++)
{
/* START adding rmatrix to TWISS input command for each sequence */
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("rmatrix", tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
local_twiss[i]->cmd_def->par->parameters[tpos]->double_value
= 1;
/* END adding rmatrix to TWISS input command for each sequence */
}
}
/* END CHK-R-MATRIX */
/* START CHK-CHROM */
if(log_val("chrom", cmd->clone)) /* chrom specified */
{
for (i = 0; i < match_num_seqs; i++) {
/* START adding chrom to TWISS input command for each sequence */
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("chrom", tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
local_twiss[i]->cmd_def->par->parameters[tpos]->double_value = 1;
set_option("twiss_chrom",&ione);
/* END adding chrom to TWISS input command for each sequence */
}
}
else set_option("twiss_chrom",&izero);
/* END CHK-CHROM */
/* START CHK-SECTORMAP */
if(par_present("sectormap", cmd->clone)) /* sectormap specified */
{
for (i = 0; i < match_num_seqs; i++)
{
/* START adding sectormap to TWISS input command for each sequence */
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("sectormap", tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
local_twiss[i]->cmd_def->par->parameters[tpos]->double_value
= 1;
/* END adding sectormap to TWISS input command for each sequence */
}
}
/* END CHK-CHROM */
/* START CHK-DELTAP */
if(command_par("deltap", cmd->clone, &cp)) /* deltap specified */
{
for (i = 0; i < match_num_seqs; i++)
{
/* START adding deltap to TWISS input command for each sequence */
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos("deltap", tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
dpp = mymalloc_atomic("match_match", 20 * sizeof *dpp);
sprintf(dpp,"%e",cp->double_array->a[0]);
local_twiss[i]->cmd_def->par->parameters[tpos]->string = dpp;
/* END adding deltap to TWISS input command for each sequence */
/* fprintf(prt_file, "entry value: %f\n", cp->double_array->a[0]);*/
/* twiss_deltas->curr=1;*/
/* twiss_deltas->a[0]=cp->double_array->a[0];*/
}
}
/* END CHK-DELTAP */
/* START CHK-ENTRIES of TYPE DOUBLE-REAL */
for (j = 0; j < nl->curr; j++)
{
if(nl->inform[j]) /* initial conditions are specified
at the match command level */
{
cp = cmd->clone->par->parameters[j];
match_num_beta = 0;
if(cp->type == 2)
{
match_num_beta = 1;
}
if(cp->type == 12)
{
match_num_beta = cp->double_array->curr;
}
if(match_num_beta > 0)
{
fprintf(prt_file, "entry name: %s\n", cmd->clone->par_names->names[j]);
fprintf(prt_file, "number of entries: %d\n", match_num_beta);
}
for (i = 0; i < match_num_beta; i++)
{
/* START defining a TWISS input command for each sequence */
match_beta_value = cp->double_array->a[i];
fprintf(prt_file, "entry value: %f\n", match_beta_value);
tnl = local_twiss[i]->cmd_def->par_names;
tpos = name_list_pos(cmd->clone->par_names->names[j], tnl);
local_twiss[i]->cmd_def->par_names->inform[tpos] = 1;
local_twiss[i]->cmd_def->par->parameters[tpos]->double_value
= cp->double_array->a[i];
/* fprintf(prt_file, "entry value: %f %f\n", match_beta_value, cp->double_array->a[i]);*/
/* END defining a TWISS input command for each sequence */
}
}
}
/* END CHK-ENTRIES of TYPE DOUBLE-REAL */
/* END CHK-BETA-INPUT */
/* START generating a TWISS table via 'pro_twiss' */
for (i = 0; i < match_num_seqs; i++)
{
/* fprintf(prt_file, "%s %s\n", "call TWISS from MATCH: sequence =",
match_sequs->sequs[i]->name); */
current_twiss = local_twiss[i]->clone;
pro_twiss();
}
/* END generating a TWISS table via 'pro_twiss' */
/* for (i = 0; i < match_sequs->curr; i++)
puts(match_sequs->sequs[i]->name); */
if ((comm = find_command("weight", defined_commands)) != NULL)
current_weight = clone_command(comm);
else fatal_error("no weight command in dictionary,","good bye");
if ((comm = find_command("gweight", defined_commands)) != NULL)
current_gweight = clone_command(comm);
else fatal_error("no gweight command in dictionary,","good bye");
}
static void
match_rmatrix(struct in_cmd* cmd)
{
(void)cmd;
}
static void
match_tmatrix(struct in_cmd* cmd)
{
(void)cmd;
}
static void
match_vary(struct in_cmd* cmd)
{
double value;
if (stored_match_var == NULL) stored_match_var = new_command_list("vary", 100);
const char* name = command_par_string_user("name", cmd->clone);
if (name)
{
value=get_variable(name);
set_value("vary","init",&value);
cmd->clone_flag = 1;
add_to_command_list(name, cmd->clone, stored_match_var, 1);
}
}
static void
match_weight(struct in_cmd* cmd)
{
struct name_list* nl = cmd->clone->par_names;
struct command_parameter_list* plc = cmd->clone->par;
if(current_weight==NULL) {
warning("WEIGHTS have to be given at the CONSTRAINT command when using: ", "MACRO");
return;
}
struct command_parameter_list* pl = current_weight->par;
int j;
for (j = 0; j < pl->curr; j++)
{
if (nl->inform[j])
{
pl->parameters[j]->double_value = plc->parameters[j]->double_value;
pl->parameters[j]->expr = plc->parameters[j]->expr;
}
}
}
// public interface
void
pro_match(struct in_cmd* cmd)
/* controls the matching module */
{
/* changed the sequence of if statements so that MAD
can go through the whole matching sequence */
if (strcmp(cmd->tok_list->p[0], "match") == 0)
{
match_match(cmd);
}
else if (match_is_on == 0)
{
warning("no MATCH command seen,","ignored");
return;
}
else if (strcmp(cmd->tok_list->p[0], "endmatch") == 0)
{
match_end(cmd);
}
else if (strcmp(cmd->tok_list->p[0], "migrad") == 0 ||
strcmp(cmd->tok_list->p[0], "lmdif") == 0 ||
strcmp(cmd->tok_list->p[0], "jacobian") == 0 ||
strcmp(cmd->tok_list->p[0], "simplex") == 0)
{
match_action(cmd);
}
else if (strcmp(cmd->tok_list->p[0], "constraint") == 0)
{
match_constraint(cmd);
}
else if (strcmp(cmd->tok_list->p[0], "couple") == 0)
{
match_couple(cmd);
}
else if (strcmp(cmd->tok_list->p[0], "fix") == 0)
{
match_fix(cmd);
}
else if (strcmp(cmd->tok_list->p[0], "global") == 0)
{
match_global(cmd);
}
else if (strcmp(cmd->tok_list->p[0], "level") == 0)