Convert block file to vcf after pruning

[pdimens]

Good afternoon,

I see there is a method for manually pruning blocks with the python script provided, which is great. Is there a way to convert a blockfile to VCF after pruning? I haven't been able to identify a feature to accomplish that.

[vibansal]

The whatshap tool (https://whatshap.readthedocs.io/en/latest/guide.html) has a subcommand (hapcut2vcf) for converting a hapcut output file to a VCF file.