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I'm trying to phase my assembly by using a VCF file where several variants are denoted as ./. for deletions. This leads to the software outputing error and results in an empty block file. I cannot substitute the . with 0.
Do you have any suggestions how to handle this?
The text was updated successfully, but these errors were encountered:
I'm trying to phase my assembly by using a VCF file where several variants are denoted as ./. for deletions. This leads to the software outputing error and results in an empty block file. I cannot substitute the . with 0.
Do you have any suggestions how to handle this?
The text was updated successfully, but these errors were encountered: