configure

#! /bin/sh
# obtain and export Rs environment variables
export R_HOME
CXX=$(R CMD config CXX)
CXXFLAGS="$(R CMD config CXXFLAGS)"
CPPFLAGS=$(R CMD config CPPFLAGS)
BLAS_LIBS=$(R CMD config BLAS_LIBS)
LAPACK_LIBS=$(R CMD config LAPACK_LIBS)
export CXX
export CXXFLAGS
export CPPFLAGS
export BLAS_LIBS
export LAPACK_LIBS
export R_INCLUDE_DIR

RCPP_DIR=$(Rscript -e "cat(system.file(package='Rcpp'))")
RCPPEIGEN_DIR=$(Rscript -e "cat(system.file(package='RcppEigen'))")
BH_DIR=$(Rscript -e "cat(system.file(package='BH'))")
export RCPP_DIR
export RCPPEIGEN_DIR
export BH_DIR
cd src

#cmake .
cmake . $@
#make -j$(grep -c ^processor /proc/cpuinfo)