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I think I need to clarify one aspect of seqArray. Does it allow for variants across samples to be different? I am trying to use seqArray to merge variants called on tumour samples and every sample would have their own variants.
I get the following error when merging two gds files created from VCF files with seqVCF2GDS:
Error in seqMerge(gds.fn = files_to_merge, out.fn = "merged.gds", : There are overlapping on both samples and variants, please merge different samples and variants respectively.
Ans I was wondering if it might be because variants are simply different across samples.
Thank you!
Anna
The text was updated successfully, but these errors were encountered:
Hi Zhengxwen,
I think I need to clarify one aspect of
seqArray
. Does it allow for variants across samples to be different? I am trying to useseqArray
to merge variants called on tumour samples and every sample would have their own variants.I get the following error when merging two
gds
files created fromVCF
files withseqVCF2GDS
:Error in seqMerge(gds.fn = files_to_merge, out.fn = "merged.gds", : There are overlapping on both samples and variants, please merge different samples and variants respectively.
Ans I was wondering if it might be because variants are simply different across samples.
Thank you!
Anna
The text was updated successfully, but these errors were encountered: