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commands.txt
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commands.txt
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curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/applications -d'{ "name": "my_app" }'
curl -X POST -F "file=@test.zip" http://localhost:5000/api/v1/upload/1?compilation_type=SINGULARITY:PM\&compilation_script=compss_build_app+Matmul
# Definition of nova testbed
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/testbeds -d'{ "name": "nova2", "on_line": true, "category": "SLURM", "protocol": "SSH", "endpoint": "ns54", "extra_config": { "enqueue_compss_sc_cfg": "nova.cfg", "enqueue_env_file": "/home_nfs/home_ejarquej/installations/rc1707/COMPSs/compssenv" }, "package_formats": [ "SINGULARITY"]}'
## Defining a local testbed:
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/testbeds -d'{ "name": "nova2", "on_line": true, "category": "SLURM", "protocol": "LOCAL", "endpoint": ""}
# Definition of a deployment
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/deployments -d'{"executable_id": 1, "testbed_id": 1}'
# Curl de Jorge
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations -d'{ "execution_type":"SINGULARITY:PM", "application_id": 1, "testbed_id": 1, "executable_id": 1, "num_nodes": 1, "num_gpus_per_node": 2, "num_cpus_per_node": 12, "exec_time": 10, "command": "/apps/application/master/Matmul 2 1024 12.34 /home_nfs/home_garciad/demo_test/cpu_gpu_run_data", "compss_config": "--worker_in_master_cpus=12 --worker_in_master_memory=24000 --worker_working_dir=/home_nfs/home_garciad --lang=c --monitoring=1000 -d"}'
# Launch the execution
curl -X PATCH -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations/1 -d'{"launch_execution": true}'
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/applications -d'{ "name": "clover_app" }'
curl -X PUT -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/applications/6 -d'{"executables":[{"compilation_script":"BuildCloverLeaf_MPI.sh","compilation_type":"SINGULARIY:SRUN","source_code_file":"/home_nfs/home_dineshkr/UseCaseMiniAppBuild/ALDE/","singularity_image_file":"/home_nfs/home_dineshkr/UseCaseMiniAppBuild/ALDE/centos-7-clover-leaf-mpi.img","singularity_app_folder":"/home_nfs/home_dineshkr/UseCaseMiniAppBuild/ALDE/","status":"COMPILED"}]}'
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/deployments -d'{"executable_id":5,"testbed_id":1,"status":"UPLOADED_UPDATED","path":"/home_nfs/home_dineshkr/UseCaseMiniAppBuild/ALDE/centos-7-clover-leaf-mpi.img"}'
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations -d'{ "execution_type":"SINGULARITY:SRUN", "application_id": 6, "testbed_id": 1, "executable_id": 5, "num_nodes": 2, "num_cpus_per_node": 8}'
curl -X PATCH -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations/5 -d'{"launch_execution": true}'
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations -d'{ "execution_type":"SINGULARITY:SRUN", "application_id": 6, "testbed_id": 1, "executable_id": 5, "num_nodes": 2, "num_cpus_per_node": 8, "num_gpus_per_node": 2}'
curl -X PATCH -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations/6 -d'{"launch_execution": true}'
[garciad@ns54 ~]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
3362 all COMPSs garciad R 0:09 1 ns50
[garciad@ns54 ~]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
3362 all COMPSs garciad R 0:10 1 ns50
[garciad@ns54 ~]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
[garciad@ns54 ~]$ sacct -j 3362 --format=JobID,JobName,MaxRSS,Elapsed
JobID JobName MaxRSS Elapsed
------------ ---------- ---------- ----------
3362 COMPSs 00:00:10
3362.batch batch 2308K 00:00:10
3362.0 mkdir 2796K 00:00:00
3362.1 singulari+ 2792K 00:00:00
TODO try first squeue (appears still RUNNING) try second sacct (it stopped) (failsafe for unknown)
### Singularity SRUN Application
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/applications -d'{ "name": "gromacs" }'
curl -X PUT -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/applications/6 -d'{"executables":[{"compilation_script":"none","compilation_type":"SLURM:SRUN", "executable_file":"/usr/local/gromacs-4.6.7-cuda2/bin/mdrun","status":"COMPILED"}]}'
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/deployments -d'{"executable_id":9,"testbed_id":1,"status":"UPLOADED_UPDATED"}'
/usr/local/gromacs-4.6.7-cuda2/bin/mdrun -s /home_nfs/home_dineshkr/Gromacs/gromacs-run/peptide_water_3k.tpr -v -nsteps 50000 -testverlet
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations -d'{ "execution_type":"SLURM:SRUN", "application_id": 6, "testbed_id": 1, "executable_id": 9, "num_gpus_per_node": 1, "num_cpus_per_node": 1, "srun_config":"--job-name gromacstest --profile=energy,task --acctg-freq=Energy=1,Task=1", "command":"-s /home_nfs/home_dineshkr/Gromacs/gromacs-run/peptide_water_3k.tpr -v -nsteps 50000 -testverlet"}'
curl -X PATCH -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations/29 -d'{"launch_execution": true}'
curl -X PATCH -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations/12 -d'{ command":"-s /home_nfs/home_dineshkr/Gromacs/gromacs-run/peptide_water_3k.tpr -v -nsteps 50000 -testverlet"}'
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/applications -d'{ "name": "my_app", "application_type": "MALLEABLE" }'
# Heat Distribution creation
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/applications -d'{ "name": "Heat Distribution", "application_type": "CHECKPOINTABLE" }'
{
"application_type": "CHECKPOINTABLE",
"deadline": null,
"executables": [],
"execution_configurations": [],
"id": 11,
"max_energy": null,
"max_energy_units": null,
"max_power": null,
"max_power_units": null,
"name": "Heat Distribution",
"priority": null,
"scaling_lower_bound": null,
"scaling_upper_bound": null
}
curl -X PUT -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/applications/11 -d'{"executables":[{"compilation_script":"none","compilation_type":"SLURM:SRUN", "executable_file":"/home_nfs/home_garciad/fti-0.9.8/build/examples/hd.exe","status":"COMPILED"}]}'
{
"application_type": "CHECKPOINTABLE",
"deadline": null,
"executables": [
{
"application_id": 11,
"compilation_script": "none",
"compilation_type": "SLURM:SRUN",
"executable_file": "/home_nfs/home_garciad/fti-0.9.8/build/examples/hd.exe",
"id": 15,
"singularity_app_folder": null,
"singularity_image_file": null,
"source_code_file": null,
"status": "COMPILED"
}
],
"execution_configurations": [],
"id": 11,
"max_energy": null,
"max_energy_units": null,
"max_power": null,
"max_power_units": null,
"name": "Heat Distribution",
"priority": null,
"scaling_lower_bound": null,
"scaling_upper_bound": null
}
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/deployments -d'{"executable_id":15,"testbed_id":1,"status":"UPLOADED_UPDATED"}'
{
"executable_id": 15,
"path": null,
"status": "UPLOADED_UPDATED",
"testbed_id": 1
}
srun -n16 /home_nfs/home_garciad/fti-0.9.8/build/examples/hd.exe 32 /home_nfs/home_garciad/fti-0.9.8/build/examples/config.fti
curl -X POST -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations -d'{ "execution_type":"SLURM:SRUN", "application_id": 11, "testbed_id": 1, "executable_id": 15, "num_cpus_per_node": 16, "srun_config":"--mpi=pmi2 --job-name heatDistributionCheckpointable --profile=energy,task --acctg-freq=Energy=1,Task=1", "command":"32 /home_nfs/home_garciad/fti-0.9.8/build/examples/config.fti"}'
{
"application": {
"application_type": "CHECKPOINTABLE",
"deadline": null,
"id": 11,
"max_energy": null,
"max_energy_units": null,
"max_power": null,
"max_power_units": null,
"name": "Heat Distribution",
"priority": null,
"scaling_lower_bound": null,
"scaling_upper_bound": null
},
"application_id": 11,
"command": "32 /home_nfs/home_garciad/fti-0.9.8/build/examples/config.fti",
"compss_config": null,
"exec_time": null,
"executable": {
"application_id": 11,
"compilation_script": "none",
"compilation_type": "SLURM:SRUN",
"executable_file": "/home_nfs/home_garciad/fti-0.9.8/build/examples/hd.exe",
"id": 15,
"singularity_app_folder": null,
"singularity_image_file": null,
"source_code_file": null,
"status": "COMPILED"
},
"executable_id": 15,
"execution_type": "SLURM:SRUN",
"executions": [],
"id": 34,
"num_cpus_per_node": 16,
"num_gpus_per_node": null,
"num_nodes": null,
"profile_file": null,
"srun_config": "--mpi=pmi2 --job-name heatDistributionCheckpointable --profile=energy,task --acctg-freq=Energy=1,Task=1",
"testbed": {
"category": "SLURM",
"endpoint": "",
"extra_config": {
"enqueue_compss_sc_cfg": "nova.cfg",
"enqueue_env_file": "/home_nfs/home_ejarquej/installations/2.2.6/COMPSs/compssenv"
},
"id": 1,
"name": "nova2",
"on_line": true,
"package_formats": [
"SINGULARITY"
],
"protocol": "LOCAL"
},
"testbed_id": 1
}
curl -X PATCH -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/execution_configurations/34 -d'{"launch_execution": true}'
curl -X PATCH -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/executions/648 -d'{"status": "STOP"}'
curl -X PATCH -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/executions/648 -d'{"status": "RESTART"}'
curl -X PATCH -H'Content-type: application/json' http://127.0.0.1:5000/api/v1/executions/648 -d'{"status": "STOPPED"}'