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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%>%")
export("changeParameter<-")
export("dat<-")
export("parameters<-")
export("preTreated<-")
export("raw<-")
export("sinfo<-")
export(QCimpute)
export(QCoccupancy)
export(QCremove)
export(QCrsdFilter)
export(aggregateMean)
export(aggregateMedian)
export(aggregateSum)
export(analysisData)
export(analysisElements)
export(analysisParameters)
export(analysisResults)
export(anova)
export(binaryComparisons)
export(bindRows)
export(clsAdd)
export(clsArrange)
export(clsAvailable)
export(clsExtract)
export(clsRemove)
export(clsRename)
export(clsReplace)
export(correctionCenter)
export(correlations)
export(correlationsParameters)
export(dat)
export(explanatoryFeatures)
export(exportParameters)
export(features)
export(importance)
export(importanceMetrics)
export(imputeAll)
export(imputeClass)
export(keepClasses)
export(keepFeatures)
export(keepSamples)
export(linearRegression)
export(mds)
export(metabolyse)
export(metrics)
export(modellingMethods)
export(modellingParameters)
export(mtry)
export(nFeatures)
export(nSamples)
export(occupancy)
export(occupancyMaximum)
export(occupancyMinimum)
export(parameters)
export(parseParameters)
export(plan)
export(plotExplanatoryHeatmap)
export(plotFeature)
export(plotImportance)
export(plotLDA)
export(plotMDS)
export(plotMetrics)
export(plotOccupancy)
export(plotPCA)
export(plotROC)
export(plotRSD)
export(plotSupervisedRF)
export(plotTIC)
export(plotUnsupervisedRF)
export(preTreated)
export(preTreatmentElements)
export(preTreatmentMethods)
export(preTreatmentParameters)
export(predict)
export(proximity)
export(randomForest)
export(raw)
export(reAnalyse)
export(removeClasses)
export(removeFeatures)
export(removeSamples)
export(response)
export(roc)
export(rsd)
export(sinfo)
export(split)
export(transformArcSine)
export(transformAuto)
export(transformCenter)
export(transformLevel)
export(transformLn)
export(transformLog10)
export(transformPareto)
export(transformRange)
export(transformSQRT)
export(transformTICnorm)
export(transformVast)
export(ttest)
export(tune)
export(type)
exportClasses(Analysis)
exportClasses(AnalysisData)
exportClasses(AnalysisParameters)
exportClasses(RandomForest)
exportClasses(Univariate)
exportMethods(QCoccupancy)
exportMethods(exportParameters)
exportMethods(plotImportance)
importFrom(Hmisc,rcorr)
importFrom(broom,glance)
importFrom(broom,tidy)
importFrom(cli,console_width)
importFrom(crayon,blue)
importFrom(crayon,bold)
importFrom(crayon,green)
importFrom(crayon,red)
importFrom(crayon,yellow)
importFrom(doFuture,registerDoFuture)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,arrange_all)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_all)
importFrom(dplyr,group_by_at)
importFrom(dplyr,group_map)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,mutate_at)
importFrom(dplyr,mutate_if)
importFrom(dplyr,n)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,rename_with)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,select_if)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_all)
importFrom(dplyr,ungroup)
importFrom(e1071,naiveBayes)
importFrom(forestControl,fpr_fs)
importFrom(furrr,furrr_options)
importFrom(furrr,future_map)
importFrom(furrr,future_map2)
importFrom(future,plan)
importFrom(ggdendro,dendro_data)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,stat_ellipse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_text_repel)
importFrom(ggthemes,ptol_pal)
importFrom(ggthemes,scale_colour_ptol)
importFrom(ggthemes,scale_fill_ptol)
importFrom(lubridate,seconds_to_period)
importFrom(magrittr,"%>%")
importFrom(magrittr,set_colnames)
importFrom(magrittr,set_names)
importFrom(magrittr,set_rownames)
importFrom(methods,"slot<-")
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(missForest,missForest)
importFrom(patchwork,plot_annotation)
importFrom(patchwork,plot_layout)
importFrom(patchwork,wrap_plots)
importFrom(purrr,map)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_depth)
importFrom(purrr,map_df)
importFrom(purrr,map_lgl)
importFrom(purrr,walk)
importFrom(randomForest,margin)
importFrom(rlang,":=")
importFrom(rlang,sym)
importFrom(stats,cmdscale)
importFrom(stats,cov)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,pnorm)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stringr,str_c)
importFrom(stringr,str_extract)
importFrom(stringr,str_remove)
importFrom(stringr,str_remove_all)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(stringr,str_split_fixed)
importFrom(stringr,str_sub)
importFrom(tibble,as_tibble)
importFrom(tibble,deframe)
importFrom(tibble,rowid_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,drop_na)
importFrom(tidyr,expand_grid)
importFrom(tidyr,gather)
importFrom(tidyr,spread)
importFrom(tidyselect,all_of)
importFrom(utils,capture.output)
importFrom(utils,combn)
importFrom(utils,packageVersion)
importFrom(yaml,read_yaml)
importFrom(yaml,write_yaml)
importFrom(yardstick,accuracy)
importFrom(yardstick,ccc)
importFrom(yardstick,kap)
importFrom(yardstick,mae)
importFrom(yardstick,mape)
importFrom(yardstick,metric_set)
importFrom(yardstick,rmse)
importFrom(yardstick,roc_auc)
importFrom(yardstick,roc_curve)
importFrom(yardstick,rsq)