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colibricore_classes.in.pxd
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colibricore_classes.in.pxd
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#*****************************
# Colibri Core
# by Maarten van Gompel
# Centre for Language Studies
# Radboud University Nijmegen
#
# http://proycon.github.io/colibri-core
#
# Licensed under GPLv3
#****************************/
from libcpp.string cimport string
from libcpp.set cimport set as stdset
from libcpp.map cimport map as stdmap
from libcpp.vector cimport vector
from libcpp cimport bool
from unordered_map cimport unordered_map
from unordered_set cimport unordered_set
from libcpp.utility cimport pair
from libc.stdint cimport *
cdef extern from "<iostream>" namespace "std":
cdef cppclass ostream:
pass
cdef cppclass istream:
pass
extern ostream cout
cdef extern from "pattern.h":
cdef cppclass PatternPointer #forward declaration
cdef cppclass Pattern:
unsigned char * data
Pattern() nogil
Pattern(Pattern&, long unsigned int,long unsigned int) nogil
Pattern(Pattern&) nogil
#Pattern(PatternPointer&) nogil
#Pattern(PatternPointer&, int,int) nogil
string tostring(ClassDecoder&) nogil
unsigned int n() nogil
unsigned int bytesize() nogil
int skipcount() nogil
int category() nogil
int hash() nogil
bint operator==(Pattern&) nogil
bint operator==(PatternPointer&) nogil
bint operator<(Pattern&) nogil
bint operator>(Pattern&) nogil
Pattern operator+(Pattern&) nogil
int ngrams(vector[Pattern]& container,int n)
int parts(vector[Pattern]& container) nogil
int gaps(vector[pair[int,int]]& container) nogil
int subngrams(vector[Pattern]& container,int minn=0,int maxn=9)
bool contains(Pattern&) nogil
Pattern toflexgram() nogil
vector[unsigned int] tovector() nogil
void set(unsigned char *,int ) nogil
bool isgap(int) nogil
bool isskipgram() nogil
bool isflexgram() nogil
bool unknown() nogil
Pattern reverse() nogil
PatternPointer getpointer() nogil
bool instanceof(PatternPointer) nogil
Pattern patternfromfile(const string&)
cdef cppclass PatternPointer:
PatternPointer() nogil
PatternPointer(Pattern&, long unsigned int,long unsigned int) nogil
PatternPointer(Pattern&) nogil
PatternPointer(PatternPointer&, long unsigned int,long unsigned int) nogil
PatternPointer(PatternPointer&) nogil
Pattern pattern() nogil
string tostring(ClassDecoder&) nogil
long unsigned int n() nogil
long unsigned int bytesize() nogil
int skipcount() nogil
int category() nogil
int hash() nogil
bint operator==(PatternPointer&) nogil
bint operator==(Pattern&) nogil
int ngrams(vector[PatternPointer]& container,int n)
int parts(vector[PatternPointer]& container) nogil
int gaps(vector[pair[int,int]]& container) nogil
int subngrams(vector[PatternPointer]& container,int minn=0,int maxn=9)
PatternPointer toflexgram() nogil
vector[unsigned int] tovector() nogil
void set(unsigned char *,int ) nogil
bool isgap(int) nogil
bool isskipgram() nogil
bool isflexgram() nogil
bool unknown() nogil
PatternPointer reverse() nogil
bool instanceof(PatternPointer) nogil
cdef extern from "datatypes.h":
cdef cppclass IndexReference:
IndexReference()
IndexReference(int,int)
uint32_t sentence
uint16_t token
cdef cppclass BaseValueHandler[T]:
unsigned int count(T &)
int add(T *, IndexReference&)
str tostring(T&)
cdef cppclass IndexedData:
cppclass iterator:
IndexReference& operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
bool has(IndexReference& ref)
cdef cppclass PatternFeatureVector[T]:
vector[T] data
Pattern pattern
cppclass iterator:
T& operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
T get(int) nogil
void clear() nogil
void push_back(T) nogil
cdef cppclass PatternFeatureVectorMap[T]:
PatternFeatureVectorMap() nogil
cppclass iterator:
PatternFeatureVector[T] * operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
bool has(Pattern&) nogil
iterator find(Pattern&) nogil
void insert(PatternFeatureVector&)
PatternFeatureVector[T] * getdata(Pattern&) nogil
cdef cppclass PatternVector:
vector[Pattern] data
cppclass iterator:
Pattern& operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
bool has(Pattern&) nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
Pattern get(int) nogil
void clear() nogil
void insert(Pattern&) nogil
cdef extern from "patternstore.h":
cdef cppclass PatternMap[ValueType,ValueHandler,ReadWriteSizeType]:
cppclass iterator:
pair[Pattern,ValueType] & operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
PatternMap() nogil
void insert(Pattern&, ValueType& value) nogil
bool has(Pattern&) nogil
ValueType& operator[](Pattern&) nogil
iterator erase(Pattern&) nogil
iterator find(Pattern&) nogil
void read(string filename) nogil
void write(string filename) nogil
cdef cppclass HashOrderedPatternMap[ValueType,ValueHandler,ReadWriteSizeType]:
cppclass iterator:
pair[Pattern,ValueType] & operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
HashOrderedPatternMap() nogil
void insert(Pattern&, ValueType& value) nogil
bool has(Pattern&) nogil
ValueType& operator[](Pattern&) nogil
iterator erase(Pattern&) nogil
iterator find(Pattern&) nogil
void read(string filename) nogil
void write(string filename) nogil
cdef cppclass PatternSet[ReadWriteSizeType]:
cppclass iterator:
Pattern& operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
PatternSet() nogil
void insert(Pattern&) nogil
bool has(Pattern&) nogil
iterator erase(Pattern&) nogil
iterator find(Pattern&) nogil
void read(string filename) nogil
void write(string filename) nogil
cdef cppclass HashOrderedPatternSet[ReadWriteSizeType]:
cppclass iterator:
Pattern& operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
HashOrderedPatternSet() nogil
void insert(Pattern&) nogil
bool has(Pattern&) nogil
iterator erase(Pattern&) nogil
iterator find(Pattern&) nogil
void read(string filename) nogil
void write(string filename) nogil
ctypedef pair[IndexReference,PatternPointer] IndexPattern
cdef cppclass IndexedCorpus:
cppclass iterator:
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
PatternPointer patternpointer() nogil
Pattern pattern() nogil #actually returns a patternpointer too but can be converted this way
IndexReference index() nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
IndexedCorpus() nogil
void load(string, bool) nogil
bool has(IndexReference&) nogil
Pattern getpattern(IndexReference&,int) except +KeyError #PatternPointer in reality
vector[pair[IndexReference,PatternPointer]] findpattern(Pattern,int sentence,bool instantiate) nogil #high level
PatternPointer getinstance(IndexReference begin, PatternPointer pattern) nogil #low level (alias for findpattern), returns ngrams since outputcategory uses default parameter NGRAM in C++ code
int operator[](IndexReference&) nogil except +KeyError
int sentencelength(int) nogil
int sentences() nogil
Pattern getsentence(int) nogil except +KeyError #PatternPointer in reality
cdef cppclass AlignedPatternMap[ValueType, ValueHandler, NestedSizeType]:
cppclass iterator:
pair[Pattern,PatternMap[ValueType,ValueHandler,NestedSizeType]]& operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
size_t size() nogil
iterator begin() nogil
iterator end() nogil
AlignedPatternMap() nogil
void insert(Pattern&, PatternMap[ValueType,ValueHandler,NestedSizeType]& value) nogil
bool has(Pattern&) nogil
PatternMap[ValueType,ValueHandler,NestedSizeType]& operator[](Pattern&) nogil
iterator erase(Pattern&) nogil
iterator find(Pattern&) nogil
void read(string filename) nogil
void write(string filename) nogil
extern Pattern SKIPPATTERN
extern Pattern FLEXPATTERN
extern Pattern UNKPATTERN
extern Pattern BOUNDARYPATTERN
cdef extern from "classdecoder.h":
cdef cppclass ClassDecoder:
ClassDecoder() nogil except +
ClassDecoder(string) nogil except +
void load(string) nogil
int size() nogil
string decodefiletostring(string, int begin = 0, int end = 0, bool quiet = False) nogil
cdef extern from "classencoder.h":
cdef cppclass ClassEncoder:
ClassEncoder(int minlength=0, int maxlength=0) nogil except +
ClassEncoder(string, int minlength=0, int maxlength=0) nogil except +
void load(string, int minlength, int maxlength) nogil
int size() nogil
void processcorpus(string filename, unordered_map[string,unsigned int]) nogil
void buildclasses(unordered_map[string,unsigned int], int threshold=0) nogil
void build(string filename,int threshold=0) nogil #build a class from this dataset
void encodefile(string, string, bool allowunknown, bool autoaddunknown, bool append,bool ignorenewlines, bool quiet) nogil
void save(string)
Pattern buildpattern(string, bool allowunknown, bool autoaddunknown) nogil
cdef extern from "patternmodel.h":
cdef cppclass PatternModelOptions:
int MINTOKENS
int MINTOKENS_UNIGRAMS
int MINTOKENS_SKIPGRAMS
int MINLENGTH
int MAXLENGTH
bool DOSKIPGRAMS
bool DOSKIPGRAMS_EXHAUSTIVE
int MINSKIPTYPES
int MAXSKIPS
bool DOREVERSEINDEX
bool DEBUG
bool QUIET
bool DOPATTERNPERLINE
bool DOREMOVENGRAMS
bool DOREMOVESKIPGRAMS
bool DOREMOVEFLEXGRAMS
bool DORESET
int PRUNENONSUBSUMED
int PRUNESUBSUMED
cdef cppclass IndexedDataHandler:
unsigned int count(IndexedData &)
int add(IndexedData *, IndexReference&)
str tostring(IndexedData&)
cdef cppclass PatternModelInterface:
int getmodeltype()
int getmodelversion()
bool has(const Pattern &)
size_t size()
unsigned int occurrencecount(Pattern & pattern)
double frequency(Pattern &)
int maxlength()
int minlength()
unsigned int types()
unsigned int tokens()
@includegcc colibricore_relationmap.gcc.pxi
@includeclang colibricore_relationmap.clang.pxi
cdef cppclass PatternSetModel:
cppclass iterator:
Pattern & operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
iterator begin() nogil
iterator end() nogil
bool has(Pattern&) nogil
unsigned int size() nogil
unsigned int occurrencecount(Pattern&) nogil #always returns 0
float frequency(Pattern&) nogil
PatternModelInterface * getinterface() nogil
void insert(Pattern&) nogil
void load(string, PatternModelOptions) nogil except +IOError
void write(string) nogil except +IOError
cdef cppclass PatternModel[ValueType,ValueHandler,MapType]:
cppclass iterator:
pair[Pattern,ValueType] & operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
iterator begin() nogil
iterator end() nogil
PatternModel() nogil
unsigned int types() nogil
unsigned int tokens() nogil
int type() nogil
int version() nogil
int maxlength() nogil
int minlength() nogil
unsigned int occurrencecount(Pattern&) nogil
unsigned int coveragecount(Pattern&) nogil
float coverage(Pattern&) nogil
float frequency(Pattern&) nogil
void add(Pattern&, ValueType*, IndexReference&)
IndexedCorpus * reverseindex
PatternModelInterface * getinterface() nogil
void train(string filename, PatternModelOptions options, PatternModelInterface *, PatternSet[uint] *)
void train(istream*, PatternModelOptions options, PatternModelInterface *, PatternSet[uint] *)
unsigned int totaloccurrencesingroup(int category, int n)
unsigned int totalpatternsingroup(int category, int n)
unsigned int totaltokensingroup(int category, int n)
unsigned int totalwordtypesingroup(int category, int n)
void insert(Pattern&, ValueType& value) nogil
bool has(Pattern&) nogil
unsigned int size() nogil
ValueType& operator[](Pattern&) nogil
bool erase(Pattern&) nogil
unsigned int prune(int threshold, int n) nogil
iterator find(Pattern&) nogil
void load(string, PatternModelOptions, PatternModelInterface*) nogil except +IOError
void write(string) nogil except +IOError
void printmodel(ostream*, ClassDecoder&) nogil
void printpattern(ostream*, ClassDecoder&, Pattern&,bool instantiate=false,bool eol=true) nogil
void report(ostream*) nogil
void histogram(stdmap[unsigned int,unsigned int] & hist, unsigned int threshold, unsigned int cap,int,unsigned int)
void histogram(ostream*) nogil
unsigned int topthreshold(int,int,int) nogil
void outputrelations(Pattern&,ClassDecoder&, ostream*)
t_relationmap getsubchildren(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
t_relationmap getsubparents(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
t_relationmap getleftneighbours(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size, unsigned int cutoff) except +KeyError
t_relationmap getrightneighbours(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size, unsigned int cutoff) except +KeyError
t_relationmap getskipcontent(Pattern & pattern) except +KeyError
t_relationmap gettemplates(Pattern & pattern, unsigned int occurrencethreshold) except +KeyError
t_relationmap getinstances(Pattern & pattern, unsigned int occurrencethreshold) except +KeyError
t_relationmap getcooc(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
t_relationmap getleftcooc(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
t_relationmap getrightcooc(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
unordered_set[PatternPointer] getreverseindex(IndexReference&)
vector[pair[IndexReference,PatternPointer]] getreverseindex_bysentence(int)
Pattern getinstance(IndexReference & begin, const Pattern & pattern) except +KeyError
cdef cppclass IndexedPatternModel[MapType]:
cppclass iterator:
pair[Pattern,IndexedData] & operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
iterator begin() nogil
iterator end() nogil
PatternModel() nogil
unsigned int types() nogil
unsigned int tokens() nogil
int type() nogil
int version() nogil
int maxlength() nogil
int minlength() nogil
unsigned int occurrencecount(Pattern&) nogil
unsigned int coveragecount(Pattern&) nogil
float coverage(Pattern&) nogil
float frequency(Pattern&) nogil
PatternModelInterface * getinterface() nogil
void train(string filename, PatternModelOptions options, PatternModelInterface *, PatternSet[uint] *)
void train(istream*, PatternModelOptions options, PatternModelInterface *, PatternSet[uint] *)
IndexedCorpus * reverseindex
bool externalreverseindex
unsigned int totaloccurrencesingroup(int category, int n)
unsigned int totalpatternsingroup(int category, int n)
unsigned int totaltokensingroup(int category, int n)
unsigned int totalwordtypesingroup(int category, int n)
void insert(Pattern&, IndexedData& value) nogil
bool has(Pattern&) nogil
unsigned int size() nogil
IndexedData& operator[](Pattern&) nogil
bool erase(Pattern&) nogil
unsigned int prune(int threshold, int n) nogil
iterator find(Pattern&) nogil
void load(string, PatternModelOptions, PatternModelInterface* ) nogil except +IOError
void write(string) nogil except +IOError
void printmodel(ostream*, ClassDecoder&) nogil
void printpattern(ostream*, ClassDecoder&, Pattern&,bool instantiate=false,bool eol=true) nogil
void report(ostream*) nogil
void histogram(ostream*) nogil
void histogram(stdmap[unsigned int,unsigned int] & hist, unsigned int threshold , unsigned int cap,int,unsigned int )
unsigned int topthreshold(int,int,int) nogil
void outputrelations(Pattern&,ClassDecoder&, ostream*)
void add(Pattern&, IndexedData*, IndexReference&)
unordered_set[PatternPointer] getreverseindex(IndexReference&)
vector[pair[IndexReference,PatternPointer]] getreverseindex_bysentence(int)
int computeflexgrams_fromskipgrams() nogil
int computeflexgrams_fromcooc(double) nogil
t_relationmap getsubchildren(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
t_relationmap getsubparents(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
t_relationmap getleftneighbours(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size, unsigned int cutoff) except +KeyError
t_relationmap getrightneighbours(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size, unsigned int cutoff) except +KeyError
t_relationmap getskipcontent(Pattern & pattern) except +KeyError
t_relationmap gettemplates(Pattern & pattern, unsigned int occurrencethreshold) except +KeyError
t_relationmap getinstances(Pattern & pattern, unsigned int occurrencethreshold) except +KeyError
t_relationmap getcooc(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
t_relationmap getleftcooc(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
t_relationmap getrightcooc(Pattern & pattern, unsigned int occurrencethreshold, int category, unsigned int size) except +KeyError
Pattern getinstance(IndexReference & begin, const Pattern & pattern) except +KeyError
cdef extern from "alignmodel.h":
cdef cppclass PatternAlignmentModel[FeatureType]:
cppclass iterator:
pair[Pattern,PatternFeatureVectorMap[FeatureType]] & operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
iterator begin() nogil
iterator end() nogil
PatternAlignmentModel() nogil
unsigned int types() nogil
unsigned int tokens() nogil
int getmodeltype()
int getmodelversion()
int maxlength() nogil
int minlength() nogil
void add(Pattern&, Pattern&, vector[FeatureType]&)
PatternModelInterface * getinterface() nogil
void insert(Pattern&, PatternFeatureVectorMap[FeatureType]& value) nogil
bool has(Pattern&) nogil
bool has(Pattern&, Pattern&) nogil
unsigned int size() nogil
PatternFeatureVectorMap[FeatureType]& operator[](Pattern&) nogil
PatternFeatureVectorMap[FeatureType]* getdata(Pattern&, bool makeifnew=False) nogil
PatternFeatureVector[FeatureType]* getfeaturevector(Pattern&, Pattern&, bool makeifnew=False) nogil
iterator erase(Pattern&) nogil
iterator find(Pattern&) nogil
void load(string, PatternModelOptions) nogil except +IOError
void write(string) nogil except +IOError
cdef cppclass BasicPatternAlignmentModel:
cppclass iterator:
pair[Pattern,PatternVector] & operator*() nogil
iterator operator++() nogil
bint operator==(iterator) nogil
bint operator!=(iterator) nogil
iterator begin() nogil
iterator end() nogil
BasicPatternAlignmentModel() nogil
unsigned int types() nogil
unsigned int tokens() nogil
int getmodeltype()
int getmodelversion()
int maxlength() nogil
int minlength() nogil
void add(Pattern&, Pattern&)
PatternModelInterface * getinterface() nogil
void insert(Pattern&, PatternVector& value) nogil
bool has(Pattern&) nogil
bool has(Pattern&, Pattern&) nogil
unsigned int size() nogil
PatternVector& operator[](Pattern&) nogil
PatternVector* getdata(Pattern&, bool makeifnew=False) nogil
iterator erase(Pattern&) nogil
iterator find(Pattern&) nogil
void load(string, PatternModelOptions) nogil except +IOError
void write(string) nogil except +IOError