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Hello- I'm getting this error repeatedly with the same script/type of data that has worked in the past. Others point out that segfaults tend to have to do with access or memory issues, but those are definitely not the problem here. Does anyone have a fix?
Hello- I'm getting this error repeatedly with the same script/type of data that has worked in the past. Others point out that segfaults tend to have to do with access or memory issues, but those are definitely not the problem here. Does anyone have a fix?
#error
var/spool/slurmd/job1288332/slurm_script: line 13: 41261 Segmentation fault
(core dumped) /projects/caan8813/software/fastq-multx/fastq-multx -B
/projects/caan8813/data/jw_cas_plate_barcodes.txt
/scratch/summit/caan8813/noadapt_justin_carly_plate.fastq -o
carly_justin_demux_%.fq
#my script
cd /projects/caan8813/data
/projects/caan8813/software/fastq-multx/fastq-multx -B /projects/caan8813/data/jw_cas_plate_barcodes.txt /scratch/summit/caan8813/noadapt_justin_carly_plate.fastq -o carly_justin_demux_%.fq
#my data
@NB501447:361:HMH5TBGX7:1:11101:4015:1057 1:N:0:1
TGAGANTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTNACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTT
+
AAAAA#EEEEEEEEEEEEE/EEEEEEEEEEEEEEEEEAEEE#AEEEEEEEEEEEEEEEEAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
@NB501447:361:HMH5TBGX7:1:11101:14166:1057 1:N:0:1
TTTCTNATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTNCTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGA
+
AAAAA#EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE#EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
@NB501447:361:HMH5TBGX7:1:11101:2740:1057 1:N:0:1
TCGCCNTAGTCAATTCAGGCAAACTTCATATCTGTCTCCCTNCATATGTATTGATCATCCTCAATAC
+
AAAAA#EEEEEEEEEEEEEEEEEEEEEAEEEEEEEEEEEEE#EEEEEEEEEEE/EE/EEEEEAAEAE
@NB501447:361:HMH5TBGX7:1:11101:20650:1057 1:N:0:1
GTAGGNAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAANGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
+
AAAAA#EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAE#EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
@NB501447:361:HMH5TBGX7:1:11101:14697:1057 1:N:0:1
GTAGGNAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAANGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
+
AAAAA#EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE/#EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE<EEEEEEEEEEEE
@NB501447:361:HMH5TBGX7:1:11101:6096:1057 1:N:0:1
AATGCNTCTCAATTTTAAAAAAAAAAAAAAAAGAGAGAATANTAGATCTTCCTACAGAGCGGAAGAGGGCGTATGCCGGCGTGGGCTTGAAA
+
AAAAA#/EAAEE6EA/EEEEEEEEEEEEEEEE/E/E//E/A#A////6E/E///A/////A6EE//////////<A////////A///////
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