issues Search Results · repo:PolarBean/DeepSlice language:Python
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inPolarBean/DeepSlice (press backspace or delete to remove)Hello,
I am having problems when aligning rat brain coronal slices using the watson atlas as reference when deepslice is
running on my computer. I ve tried with different settings but the result is not ...
samuelmp99
- 3
- Opened on Apr 22
- #68
Hi
I have the following slices that were stained using differents dyes (1 image per dye):
$ ls *.png | head -n 6
B1_CNPase_s001.png
B1_DAPI_s001.png
B1_NeuN_s001.png
B2_CNPase_s002.png
B2_DAPI_s002.png ...
jflucier
- 2
- Opened on Apr 2
- #67
Hi,
when I run deepslice I get the following warning:
Using ensemble=False section=True
Downloading file from https://data-proxy.ebrains.eu/api/v1/buckets/deepslice/weights/xception_weights_tf_dim_ordering_tf_kernels.h5 ...
jflucier
- 2
- Opened on Apr 2
- #66
Thanks for make this convent tool.
I wonder if Deepslice will support Kim Atlas in the future.
GitHubd3b7c
- 1
- Opened on Feb 27
- #65
Hello,
I ve used the web application to allign my brain slices. However, lately it won t follow through the process and will
show an error message: 500 Internal Server Error: The server encountered an ...
TomHaran
- 4
- Opened on Feb 22
- #64
Beginner with Deepslice and ABBA, the performance of Deepslice is amazing for coronal sections, but seems no option for
sagittal slices. I am just wondering if there are any solutions for sagittal slices. ...
VeraWFbjmu
- 2
- Opened on Dec 4, 2024
- #63
Hi, I am trying to use DeepSlice in ABBA, but my 8-bit OME-TIFF files are over 600 MB each. Can DeepSlice handle files
of this size? If not, what steps should I take to optimize my workflow and make these ...
Maxwell-X-Chen
- 2
- Opened on Dec 3, 2024
- #62
Dear Author,
I hope this message finds you well. I have followed the instrutions that you wrote in the READ ME page and encounted
this issue: OSError: Unable to synchronously open file (truncated file: ...
Guanhaoyu104
- 5
- Opened on Nov 17, 2024
- #61
Hi. Is there any trick to using half pictures of a brain? Like the left or right part of a frontal section? Thanks.
Petro.
khoroshyy
- 1
- Opened on Oct 20, 2024
- #60
Hello!
I m reaching out because we would love to have DeepSlice listed on Open Neuroscience, and also share information about
it:
Open Neuroscience is a community run project, where we are curating and ...
amchagas
- 3
- Opened on Oct 15, 2024
- #59

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