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Hello, I am having problems when aligning rat brain coronal slices using the watson atlas as reference when deepslice is running on my computer. I ve tried with different settings but the result is not ...
  • samuelmp99
  • 3
  • Opened 
    on Apr 22
  • #68

Hi I have the following slices that were stained using differents dyes (1 image per dye): $ ls *.png | head -n 6 B1_CNPase_s001.png B1_DAPI_s001.png B1_NeuN_s001.png B2_CNPase_s002.png B2_DAPI_s002.png ...
  • jflucier
  • 2
  • Opened 
    on Apr 2
  • #67

Hi, when I run deepslice I get the following warning: Using ensemble=False section=True Downloading file from https://data-proxy.ebrains.eu/api/v1/buckets/deepslice/weights/xception_weights_tf_dim_ordering_tf_kernels.h5 ...
  • jflucier
  • 2
  • Opened 
    on Apr 2
  • #66

Thanks for make this convent tool. I wonder if Deepslice will support Kim Atlas in the future.
  • GitHubd3b7c
  • 1
  • Opened 
    on Feb 27
  • #65

Hello, I ve used the web application to allign my brain slices. However, lately it won t follow through the process and will show an error message: 500 Internal Server Error: The server encountered an ...
  • TomHaran
  • 4
  • Opened 
    on Feb 22
  • #64

Beginner with Deepslice and ABBA, the performance of Deepslice is amazing for coronal sections, but seems no option for sagittal slices. I am just wondering if there are any solutions for sagittal slices. ...
  • VeraWFbjmu
  • 2
  • Opened 
    on Dec 4, 2024
  • #63

Hi, I am trying to use DeepSlice in ABBA, but my 8-bit OME-TIFF files are over 600 MB each. Can DeepSlice handle files of this size? If not, what steps should I take to optimize my workflow and make these ...
  • Maxwell-X-Chen
  • 2
  • Opened 
    on Dec 3, 2024
  • #62

Dear Author, I hope this message finds you well. I have followed the instrutions that you wrote in the READ ME page and encounted this issue: OSError: Unable to synchronously open file (truncated file: ...
  • Guanhaoyu104
  • 5
  • Opened 
    on Nov 17, 2024
  • #61

Hi. Is there any trick to using half pictures of a brain? Like the left or right part of a frontal section? Thanks. Petro.
  • khoroshyy
  • 1
  • Opened 
    on Oct 20, 2024
  • #60

Hello! I m reaching out because we would love to have DeepSlice listed on Open Neuroscience, and also share information about it: Open Neuroscience is a community run project, where we are curating and ...
  • amchagas
  • 3
  • Opened 
    on Oct 15, 2024
  • #59
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