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Intron feature missing in the gtf #472
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could you provide a piece of sample to test? |
I have tested with that file and it works perfectly well |
I had this file:
I am using the singularity container and have just downloaded it yesterday so it should be the latest version: ` |
Oh right you are using version 1.0.0. So then you fall in a particular bug that has been fixed in most recent versions. Please use v1.4.0. |
Oh I see, I got it form the main page so it was not updated to the latest version :) Thanks, I will check that |
using the latest version solved my problem, thanks. |
my gff file has intron annotations but they disappear in the gtf.
I tried different versions of gtf but they don't work for me and only the standard default version creates an output and that does not include introns.
How can I add them into the gtf file?
my code is
agat_convert_sp_gff2gtf.pl --gff <filename> -o <filename>
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