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Problems relevant to using model_best weight for synapse task. #79
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Can you provide me with the complete error information, we want to know which step turns to this result |
Sorry for missing error report details.The report in the terminal when runing inference is inclueded as follow:
The model_best weight of synapse task used in the inference is downloded from the link provided in the repo.In order to distinct the official file and the model trained by myself,I changed the official model name.I hope this won't lead to such error. Thank you for your attention. Best wishes. |
The situation occurs because the inference code read the model.best.pkl, and I update the code of |
Maybe you should change the name to model_best_official.model.pkl? The pkl file should be ended with xxx.model.pkl |
Hi,after using the updated file and the model.pkl file produced when I ran the code ,I successfully get the same results in your paper. I appreciate your help very much. Besides,I noticed that the result ran by myself is different from yours.I got lower average mean dice.The dice score of different organs also differes a lot. Mean_Dice dsc:0.8561432363347312 I found that the some random settings are not fixed.For example, Looking foward to your reply. Best wishes. |
Hi there,when using the pretrained model_best weight relevant to synapse task,some error occur.
No such file or directory: '/home/xychen/new_transformer/nnUNetFrame/DATASET/nnUNet_preprocessed/Task002_Abdomen/nnUNetPlansv2.1_plans_3D.pkl'
I thought there maybe some setting errors but I coundn't find it.
Could you please tell me which part setting lead to such error and how to fix it?
Looking forward to your reply.
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