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a weird problem "class 'urllib.error.URLError'" #39
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Hi, |
Hi Jamaliki,
All best, |
Hi Jamaliki,
All best, |
Hi, Yes you can download them by yourself. Although I am not sure which part is giving an error, is the ESM model downloading or the ModelAngelo weights. So, could you upload your model_angelo.log file? |
In the meantime, here is a bash script to download the weights yourself (courtesy of GPT-4 ;) ):
|
You should run the script above with the |
Thanks for your quick replies. The script you provided is working to download the weights now. I'm not sure whether this connection error relates about ESM model or model_weights downloading. Here is my error log file. Thanks for your time. |
Let me know if you have any more issues! |
Hi Model-angelo experts,
When I used the model_angelo to predict the protein sequence with a MRC map only, some error had appeared as following that
"File "/data/wangning/anaconda3/envs/model_angelo/lib/python3.9/urllib/request.py", line 494, in _call_chain
result = func(*args)
│ └ (<urllib.request.Request object at 0x7fb18f8d4730>,)
└ <bound method HTTPSHandler.https_open of <urllib.request.HTTPSHandler object at 0x7fb18f8bb430>>
File "/data/wangning/anaconda3/envs/model_angelo/lib/python3.9/urllib/request.py", line 1389, in https_open
return self.do_open(http.client.HTTPSConnection, req,
│ │ │ │ │ └ <urllib.request.Request object at 0x7fb18f8d4730>
│ │ │ │ └ <class 'http.client.HTTPSConnection'>
│ │ │ └ <module 'http.client' from '/data/wangning/anaconda3/envs/model_angelo/lib/python3.9/http/client.py'>
│ │ └ <module 'http' from '/data/wangning/anaconda3/envs/model_angelo/lib/python3.9/http/init.py'>
│ └ <function AbstractHTTPHandler.do_open at 0x7fb2375c1d30>
└ <urllib.request.HTTPSHandler object at 0x7fb18f8bb430>
File "/data/wangning/anaconda3/envs/model_angelo/lib/python3.9/urllib/request.py", line 1349, in do_open
raise URLError(err)
└ <class 'urllib.error.URLError'>
urllib.error.URLError: <urlopen error [Errno 111] Connection refused> " Does It seem that model_angelo try to connect the internet? I don't understand this error. I used GPU 2080Ti and CUDA11.5 for this. Please help me. Thanks in advance!
Best regards,
Ning
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