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perftest.js
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perftest.js
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/*
* QUnit benchmark tests for $3Dmol, GLmol, and JSmol
*/
//Test rendering performance for different sized pdb's
var profile = QUnit.urlParams.profilecheck;
var testSuite = testSuite || "3Dmol";
// Style types to test
var styleSpec = ["line", "stick", "sphere", "cartoon"];
// $3Dmol testcase generator
var gen$3DmolTestCase = function(styleType) {
var testName = styleType + " render";
var timeMsg = styleType + " render time: ";
var testMsg = styleType + " style set correctly";
var style = {}; style[styleType] = {};
QUnit.test(testName, function() {
viewer.setStyle({}, {cross:{}});
viewer.render();
console.group(testName);
var start = new Date();
viewer.setStyle({}, style);
viewer.render();
var end = new Date();
var testTime = end - start;
viewer.rotate(10);
var time2 = new Date() - end;
resultTimes[testName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.log(timeMsg + (testTime) + "ms; rotate "+time2+"ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
};
//GLmol test generator
var genGLmolTestCase = function(styleType, profile) {
var testName = styleType + " render";
var timeMsg = styleType + " render time: ";
var testMsg = styleType + " style set correctly";
var defineRep = function(style){
var all = viewer.getAllAtoms();
return function() {
//var all = this.getAllAtoms();
var target = this.modelGroup;
if (style === 'stick')
this.drawBondsAsStick(target, all, this.cylinderRadius, this.cylinderRadius, true);
else if (style === 'line')
this.drawBondsAsLine(target, all, this.lineWidth);
else if (style === 'cross')
this.drawAsCross(target, all, 0.3, true);
else if (style === 'sphere')
this.drawAtomsAsSphere(target, all, this.sphereRadius);
else if (style === 'cartoon') {
//this.colorChainbow(all);
this.drawCartoon(target, all, false, this.thickness);
}
};
};
QUnit.test(testName, function() {
console.group(testName);
var view = viewer.getView();
viewer.initializeScene();
var all = viewer.getAllAtoms();
viewer.zoomInto(all);
viewer.defineRepresentation = defineRep(styleType);
var start = new Date();
//Draw appropriate style
viewer.defineRepresentation();
viewer.setView(view);
viewer.show();
var end = new Date();
var testTime = end - start;
resultTimes[testName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
ok(true, testMsg);
});
};
//JSmol testcase generator
var genJSmolTestCase = function(styleType, profile) {
var testName = styleType + " render";
var timeMsg = styleType + " render time: ";
var testMsg = styleType + " style set correctly";
var script = "";
if (styleType === "line") {
script += "wireframe only;";
}
else if (styleType === "stick") {
script += "wireframe 100 only;";
}
else if (styleType === "sphere") {
script += "spacefill only;";
}
else if (styleType === "cartoon")
script += "set cartoonFancy true; cartoon only;";
//Create test case
QUnit.test(testName, function() {
console.group(testName);
var start = new Date();
Jmol.scriptWait(viewer, script);
Jmol.scriptWaitOutput(viewer, "refresh;");
var end = new Date();
var testTime = end - start;
Jmol.scriptWaitOutput(viewer,"rotate 10; refresh;");
var time2 = new Date() - end;
resultTimes[testName] = testTime;
console.log(timeMsg + (testTime) + "ms; rotate "+time2+"ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
};
// Setup test modules
//$3Dmol tests
if (testSuite === '3Dmol') {
QUnit.module( "$3Dmol Tests", {
setupOnce: function() {
viewer.zoomTo();
console.group("$3Dmol");
},
teardownOnce: function() {
console.groupEnd();
}
});
// $3Dmol test cases
for (var style in styleSpec)
gen$3DmolTestCase(styleSpec[style], profile);
//surface test
/*
var testName = "SURF render";
var timeMsg = "surface render time: ";
var testMsg = "surface style set correctly";
QUnit.test(testName, function() {
viewer.setStyle({}, {});
viewer.render();
console.group(testName);
var start = new Date();
viewer.addSurface($3Dmol.SurfaceType.VDW, {}, {}, {}, {});
viewer.render();
var end = new Date();
var testTime = end - start;
resultTimes[testName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
*/
//Combo testcase
var comboName = "combined";
QUnit.test(comboName, function() {
viewer.setStyle({}, {});
viewer.removeAllSurfaces();
viewer.render();
console.group(comboName);
var start = new Date();
viewer.setStyle({chain: 'A'}, {sphere: {} });
viewer.setStyle({chain: 'B'}, {cartoon: {color: 'spectrum'} });
viewer.setStyle({chain: 'C'}, {stick: {} });
viewer.render();
//Jmol.scriptWait(viewer, "select chain=A; spacefill; select chain=B; cartoon; color group; wireframe; select chain=C; wireframe 80;");
var end = new Date();
var testTime = end - start;
resultTimes[comboName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
var rotateName = "rotate";
QUnit.test(rotateName, function() {
console.group(rotateName);
var start = new Date();
viewer.rotate(10);
var end = new Date();
var testTime = end - start;
resultTimes[rotateName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
}
else if (testSuite === "glmol") {
//GLmol testing module
QUnit.module( "GLmol Tests", {
setupOnce: function() {
var all = viewer.getAllAtoms();
viewer.zoomInto(all);
console.group("GLmol");
},
teardownOnce: function() {
console.groupEnd();
//glviewer.removeAllModels();
}
});
// for (var style in styleSpec)
// genGLmolTestCase(styleSpec[style], profile);
var combinedName = "combined";
QUnit.test(combinedName, function() {
console.group(combinedName);
var view = viewer.getView();
viewer.initializeScene();
var all = viewer.getAllAtoms();
var chainA = [];
var chainB = [];
var chainC = [];
for(var i = 0; i < all.length; i++) {
if(viewer.atoms[all[i]].chain == 'A') chainA.push(all[i]);
else if(viewer.atoms[all[i]].chain == 'B') chainB.push(all[i]);
else if(viewer.atoms[all[i]].chain == 'C') chainC.push(all[i]);
}
var start = new Date();
//Draw appropriate style
// viewer.setStyle({chain: 'A'}, {sphere: {} });
//viewer.setStyle({chain: 'B'}, {cartoon: {color: 'spectrum'} });
viewer.drawAtomsAsSphere(viewer.modelGroup, chainA, viewer.sphereRadius);
viewer.colorChainbow(chainB);
viewer.drawCartoon(viewer.modelGroup, chainB, false, viewer.thickness);
viewer.drawBondsAsStick(viewer.modelGroup, chainC, viewer.cylinderRadius, viewer.cylinderRadius, true);
viewer.zoomInto(all);
viewer.show();
var end = new Date();
var testTime = end - start;
resultTimes[combinedName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
var rotateName = "rotate";
QUnit.test(rotateName, function() {
console.group(rotateName);
var view = viewer.getView();
var dx = .1;
var dy = 0;
var r = Math.sqrt(dx * dx + dy * dy);
var rs = Math.sin(r * Math.PI) / r;
var start = new Date();
//Draw appropriate style
// viewer.setStyle({chain: 'A'}, {sphere: {} });
//viewer.setStyle({chain: 'B'}, {cartoon: {color: 'spectrum'} });
viewer.dq.x = Math.cos(r * Math.PI);
viewer.dq.y = 0;
viewer.dq.z = rs * dx;
viewer.dq.w = rs * dy;
viewer.rotationGroup.quaternion = new THREE.Quaternion(1, 0, 0, 0);
viewer.rotationGroup.quaternion.multiplySelf(viewer.dq);
viewer.rotationGroup.quaternion.multiplySelf(viewer.cq);
viewer.show();
var end = new Date();
var testTime = end - start;
resultTimes[rotateName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
}
else if (testSuite === "glmol_surf") {
QUnit.module( "GLmol Surface Test", {
setupOnce: function() {
var all = viewer.getAllAtoms();
viewer.zoomInto(all);
console.group("GLmol");
},
teardownOnce: function() {
console.groupEnd();
}
});
var testName = "surf render";
var timeMsg = "surf render time: ";
var testMsg = "surf style set correctly";
var defineRep = function(){
var all = viewer.getAllAtoms();
return function() {
//var all = this.getAllAtoms();
var target = this.modelGroup;
this.drawAsCross(target, all, 0.3, true);
};
};
QUnit.test(testName, function() {
console.group(testName);
var view = viewer.getView();
viewer.initializeScene();
var all = viewer.getAllAtoms();
viewer.zoomInto(all);
viewer.defineRepresentation = defineRep();
//Draw appropriate style
//viewer.defineRepresentation();
//viewer.drawAsCross(viewer.modelGroup, all, 0.3, true);
var start = new Date();
viewer.generateMesh(viewer.modelGroup, all, 1, false);
viewer.setView(view);
viewer.show();
var end = new Date();
var testTime = end - start;
resultTimes[testName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
ok(true, testMsg);
});
}
else if (testSuite === "jmol") {
//JSmol Tests
QUnit.module( "Jmol Tests", {
setupOnce: function() {
Jmol.scriptWait(viewer, "load test_structs/3M8L.pdb");
var end = new Date();
resultTimes['initialization'] = end - start;
console.group("JSmol");
console.log("starting JSmol tests");
},
teardownOnce: function() {
console.groupEnd();
//$("#viewerdiv").empty();
}
});
/*
for (var style in styleSpec)
genJSmolTestCase(styleSpec[style], profile);
// Surf test
var testName = "surface render";
var timeMsg = "surface render time: ";
var testMsg = "surface style set correctly";
//Create test case
QUnit.test(testName, function() {
Jmol.scriptWait(viewer, "select *; wireframe off; cartoon off; spacefill off; refresh;");
console.group(testName);
var start = new Date();
Jmol.scriptWait(viewer, "select *; isosurface vdw; refresh;");
var end = new Date();
var testTime = end - start;
resultTimes[testName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
*/
//Combo testcase
var comboName = "combined";
QUnit.test(comboName, function() {
Jmol.scriptWait(viewer, "select *; wireframe off; cartoon off; spacefill off; isosurface off; refresh;");
console.group(comboName);
var start = new Date();
Jmol.scriptWait(viewer, "select chain=A; spacefill; select chain=B; cartoon; color group; wireframe; select chain=C; wireframe 80;");
Jmol.scriptWaitOutput(viewer,"refresh;");
var end = new Date();
var testTime = end - start;
resultTimes[comboName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
var rotateName = "rotate";
QUnit.test(rotateName, function() {
console.group(rotateName);
var start = new Date();
Jmol.scriptWaitOutput(viewer,"rotate 10; refresh;");
var end = new Date();
var testTime = end - start;
resultTimes[rotateName] = testTime;
console.log(timeMsg + (testTime) + "ms");
console.groupEnd();
QUnit.ok(true, testMsg);
});
}