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index.html
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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>3Dmol.js - A modern, object-oriented JavaScript library for visualizing molecular data</title>
<link type="text/css" rel="stylesheet" href="css/index.css">
<script src="build/3Dmol.js"></script>
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-55629183-1', 'auto');
ga('send', 'pageview');
</script>
<script>
var $3Dmol = $3Dmol || {};
var $ = jQuery || {};
var initSDF = function(viewer) {
var s1 = viewer.addSphere({radius: 1.25, center: {x:-6.89, y:0.75, z:0.35}});
s1.wireframe = true; s1.color = $3Dmol.CC.color("purple");
viewer.addLabel("Aromatic", {position: {x:-6.89, y:0.75, z:0.35}, backgroundColor: 0x800080, backgroundOpacity: 0.8});
var s2 = viewer.addSphere({radius: 1.25, center: {x:1.32, y:2.91, z:-1.49}});
s2.wireframe = true; s2.color = $3Dmol.CC.color("purple");
viewer.addLabel("Aromatic", {position: {x:1.32, y:2.91, z:-1.49}, backgroundColor: 0x800080, backgroundOpacity: 0.8});
var s3 = viewer.addSphere({radius: 0.5, center: {x:-0.42, y:-0.48, z:0.64}});
s3.wireframe = true; s3.color = $3Dmol.CC.color(0xbbbbbb);
var a = viewer.addArrow({start: {x:-0.4217, y:-0.4795, z:0.6395}, end: {x:-0.613, y:-0.891, z:-0.198},
radius: 0.1});
viewer.addLabel("Hydrogen Donor", {position: {x:-0.4217, y:-0.4795, z:0.6395}, backgroundColor: 0x808080, backgroundOpacity:0.8});
a.color = $3Dmol.CC.color(0xeeeeee);
viewer.render();
};
var initShapes = function(viewer) {
$.get('tests/test_structs/benzene-homo.cube', function(data){
var voldata = new $3Dmol.VolumeData(data, "cube");
if(viewer.hasVolumetricRender()) {
viewer.addVolumetricRender(voldata, {transferfn: [{color: "blue", opacity: .075, value: 0.1},
{color: "blue", opacity: .001, value: 0.01},
{color: "white", opacity: 0, value: 0},
{color: "red", opacity: .001, value: -0.01},
{color: "red", opacity: .075, value: -0.1}]});
} else {
viewer.addIsosurface(voldata, {isoval: 0.01, color: "blue", alpha: 0.95, smoothness: 10});
viewer.addIsosurface(voldata, {isoval: -0.01, color: "red", alpha: 0.95, smoothness: 10});
}
viewer.setStyle({}, {stick:{}});
viewer.zoomTo();
viewer.render();
}, 'text');
};
var init1YCR = function(viewer) {
viewer.addStyle({}, {"line":{}});
viewer.addSurface($3Dmol.SurfaceType.VDW, {'opacity':0.8, colorscheme: 'whiteCarbon'}, {"chain":"A"},{"chain":"A"});
viewer.addStyle({"chain":"B"}, {"stick":{colorscheme:'Jmol'}});
viewer.zoomTo({"chain":"B"});
};
var addSurf = function(viewer) {
viewer.addSurface($3Dmol.SurfaceType.VDW, {opacity:0.75},
{hetflag: false}, {hetflag:false}, {chain: 'B'});
};
$( document ).ready(function() {
var hidetext = function () {
$("#text3Dmol").hide();
$("#viewtext").hide();
$("#embedtext").hide();
$("#teachtext").hide();
$("#jupytertext").hide();
$("#developtext").hide();
};
$('#view').hover(
function () {
hidetext();
$("#viewtext").show();
},
function () {
hidetext();
$("#text3Dmol").show();
});
$('#embed').hover(
function () {
hidetext();
$("#embedtext").show();
},
function () {
hidetext();
$("#text3Dmol").show();
});
$('#teach').hover(
function () {
hidetext();
$("#teachtext").show();
},
function () {
hidetext();
$("#text3Dmol").show();
});
$('#jupyter').hover(
function () {
hidetext();
$("#jupytertext").show();
},
function () {
hidetext();
$("#text3Dmol").show();
});
$('#develop').hover(
function () {
hidetext();
$("#developtext").show();
},
function () {
hidetext();
$("#text3Dmol").show();
});
});
</script>
</head>
<body>
<div id=content>
<div class="header">
<div id="title3Dmol"><b>3D</b>mol<font style="font-weight:400">.js</font></div>
<div id="title3Dmolright" >
<div id="strip" class = "titlefont">
<a href="doc/tutorial-url.html" id="view" class="titletext">View</a>
<a href="doc/tutorial-embeddable.html" id="embed" class="titletext">Embed</a>
<a href="doc/tutorial-learning_environment.html" id="teach" class="titletext">Teach</a>
<a href="https://colab.research.google.com/drive/1T2zR59TXyWRcNxRgOAiqVPJWhep83NV_?usp=sharing" id="jupyter" class="titletext">Jupyter</a>
<a href="doc/index.html" id="develop" class="titletext">Develop</a>
</div>
<div id="infotext">
<span id="text3Dmol" class="floattext">A modern, object-oriented JavaScript library for visualizing molecular data</span>
<span id="viewtext" class="floattext">View structures through a declarative URL interface</span>
<span id="embedtext" class="floattext">Embed molecular viewers in webpages with two lines of code</span>
<span id="teachtext" class="floattext">Engage students while teaching molecular structures</span>
<span id="jupytertext" class="floattext">Include interactive 3D structures in Jupyter notebooks</span>
<span id="developtext" class="floattext">Develop web applications using a full featured API</span>
</div>
</div>
<div id="rightstrip" class="titlefont">
<a id="issues" href="https://github.com/3dmol/3Dmol.js/issues" class="titletext">Feedback</a>
<a id="help" href="https://github.com/3dmol/3Dmol.js" class="titletext">Download</a>
</div>
</div>
</div>
<div id="viewercontainer" class = "body row">
<div class="table">
<div class="tablerow">
<div id='viewer1' class='viewer_3Dmoljs' data-href='tests/test_structs/2por.pdb' data-backgroundcolor='0xffffff' data-select='{"hetflag":false}' data-style='{"cartoon":{"color":"spectrum"}}'></div>
<div id='viewer2' class='viewer_3Dmoljs' data-element='moldata_sdf' data-datatype='sdf' data-style='{"stick":{}}' data-callback='initSDF' data-backgroundcolor='0xf6f6f6'></div>
</div>
<div class="tablerow">
<div id='viewer4' class='viewer_3Dmoljs' data-href="tests/test_structs/benzene.sdf" data-datatype="sdf" data-callback='initShapes' data-backgroundcolor='0xf6f6f6'></div>
<div id='viewer3' class='viewer_3Dmoljs' data-href='tests/test_structs/1YCR.pdb' data-backgroundcolor='0xffffff' data-style='{"cartoon":{}}' data-callback='init1YCR'></div>
</div>
</div>
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</textarea>
</body>
</html>