api.rst

API reference

Importing Model

nemf

Model Functions

nemf.models

model_class

Visualizing Model

nemf

Forcasting Model

nemf

Fitting Model

nemf

Visualizing Results

nemf

Interaction Functions

Here a list of all currently implemented interaction functions is presented. These can be used in the YAML model configuration to describe interactions between to compartments.

Note

The compartments are referenced via indices in the implementation of the interaction functions. This is simply an implementation detail. The user can (and should) use the compartment names when referencing them in the YAML configuration file. The framework handles the mapping of the names to the corresponding indeces internally.

nemf.interaction_functions