references.bib

@article{aru-vs-cams-wolves,
  author = {Garland, Laura and Crosby, Andrew and Hedley, Richard and Boutin, Stan and Bayne, Erin},
  title = {Acoustic vs. photographic monitoring of gray wolves ({Canis lupus}): a methodological comparison of two passive monitoring techniques},
  journal = {Canadian Journal of Zoology},
  volume = {98},
  number = {3},
  pages = {219-228},
  year = {2020},
  doi = {10.1139/cjz-2019-0081},
  URL = {https://doi.org/10.1139/cjz-2019-0081},
}

@article{vis-scan-amphs,
author = {Cameron, J. and Crosby, A. and Paszkowski, C. and Bayne, E.},
title = {Visual spectrogram scanning paired with an observation–confirmation occupancy model improves the efficiency and accuracy of bioacoustic anuran data},
journal = {Canadian Journal of Zoology},
volume = {98},
number = {11},
pages = {733-742},
year = {2020},
doi = {10.1139/cjz-2020-0103},
URL = {https://doi.org/10.1139/cjz-2020-0103}
}

@article{all-the-scans,
author = {Ware, Lena and Mahon, C. Lisa and McLeod, Logan and Jetté, Jean-François},
title = {Artificial intelligence (BirdNET) supplements manual methods to maximize bird species richness from acoustic data sets generated from regional monitoring},
journal = {Canadian Journal of Zoology},
volume = {101},
number = {12},
pages = {1031-1051},
year = {2023},
doi = {10.1139/cjz-2023-0044},
URL = {https://doi.org/10.1139/cjz-2023-0044}
}

@article{mackenzie2002estimating,
  title={Estimating site occupancy rates when detection probabilities are less than one},
  author={MacKenzie, Darryl I and Nichols, James D and Lachman, Gideon B and Droege, Sam and Andrew Royle, J and Langtimm, Catherine A},
  journal={Ecology},
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}

@article{imperfect-occu,
author = {MacKenzie, Darryl I. and Nichols, James D. and Hines, James E. and Knutson, Melinda G. and Franklin, Alan B.},
title = {ESTIMATING SITE OCCUPANCY, COLONIZATION, AND LOCAL EXTINCTION WHEN A SPECIES IS DETECTED IMPERFECTLY},
journal = {Ecology},
volume = {84},
number = {8},
pages = {2200-2207},
keywords = {colonization, detection probability, local extinction, metapopulation, monitoring, open population, patch occupancy, robust design, site occupancy},
doi = {https://doi.org/10.1890/02-3090},
url = {https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/02-3090},
eprint = {https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.1890/02-3090},
year = {2003}
}

@article{lots-of-pam,
    author = {Sugai, Larissa Sayuri Moreira and Silva, Thiago Sanna Freire and Ribeiro, José Wagner, Jr and Llusia, Diego},
    title = "{Terrestrial Passive Acoustic Monitoring: Review and Perspectives}",
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    eprint = {https://academic.oup.com/bioscience/article-pdf/69/1/15/27503065/biy147.pdf},
}

@article{abrahms2023climate,
  title={Climate change as a global amplifier of human--wildlife conflict},
  author={Abrahms, Briana and Carter, Neil H and Clark-Wolf, TJ and Gaynor, Kaitlyn M and Johansson, Erik and McInturff, Alex and Nisi, Anna C and Rafiq, Kasim and West, Leigh},
  journal={Nature Climate Change},
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  year={2023},
  publisher={Nature Publishing Group UK London}
}

@article{sattar2021review,
  title={Review on climate change and its effect on wildlife and ecosystem},
  author={Sattar, Q and Maqbool, ME and Ehsan, R and Akhtar, S and Sattar, Q and Maqbool, ME and Ehsan, R and Akhtar, S},
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  year={2021}
}

@article{lemieux2011state,
  title={The state of climate change adaptation in Canada's protected areas sector},
  author={Lemieux, Christopher J and Beechey, Thomas J and Scott, Daniel J and Gray, Paul A},
  journal={The Canadian Geographer/Le G{\'e}ographe canadien},
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}

@article{allan2017recent,
  title={Recent increases in human pressure and forest loss threaten many Natural World Heritage Sites},
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  journal={Biological conservation},
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}

@article{fahrig2003effects,
  title={Effects of habitat fragmentation on biodiversity},
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}

@article{mantyka2012interactions,
  title={Interactions between climate and habitat loss effects on biodiversity: a systematic review and meta-analysis},
  author={Mantyka-pringle, Chrystal S and Martin, Tara G and Rhodes, Jonathan R},
  journal={Global Change Biology},
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}

@article{hanski2011habitat,
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  journal={Ambio},
  volume={40},
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  year={2011},
  publisher={Springer}
}



@article{time-removal,
    author = {Sólymos, Péter and Matsuoka, Steven M. and Cumming, Steven G. and Stralberg, Diana and Fontaine, Patricia and Schmiegelow, Fiona K. A. and Song, Samantha J. and Bayne, Erin M.},
    title = "{Evaluating time-removal models for estimating availability of boreal birds
          during point count surveys: Sample size requirements and model complexity}",
    journal = {The Condor},
    volume = {120},
    number = {4},
    pages = {765-786},
    year = {2018},
    month = {08},
    issn = {1938-5129},
    doi = {10.1650/CONDOR-18-32.1},
    url = {https://doi.org/10.1650/CONDOR-18-32.1},
    eprint = {https://academic.oup.com/condor/article-pdf/120/4/765/28999418/condor0765.pdf},
}

@article{aru-overview,
  title={Autonomous recording units in avian ecological research: current use and future applications.},
  author={Shonfield, Julia and Bayne, Erin M},
  journal={Avian Conservation \& Ecology},
  volume={12},
  number={1},
  year={2017}
}

@article{arus-mics,
  title={Microphone variability and degradation: implications for monitoring programs employing autonomous recording units},
  author={Patrick Turgeon and Steven L. Van Wilgenburg and Kiel L. Drake},
  journal={Avian Conservation and Ecology},
  year={2017},
  volume={12},
  url={https://api.semanticscholar.org/CorpusID:89959184}
}

@article{occu-fit,
 ISSN = {10857117},
 URL = {http://www.jstor.org/stable/1400484},
 author = {Darryl I. MacKenzie and Larissa L. Bailey},
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 publisher = {[International Biometric Society, Springer]},
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 urldate = {2024-02-01},
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}

@article{farnsworth2002removal,
  title={A removal model for estimating detection probabilities from point-count surveys},
  author={Farnsworth, George L and Pollock, Kenneth H and Nichols, James D and Simons, Theodore R and Hines, James E and Sauer, John R},
  journal={The Auk},
  volume={119},
  number={2},
  pages={414--425},
  year={2002},
  publisher={Oxford University Press}
}

@article{knight2019classification,
  title={Classification threshold and training data affect the quality and utility of focal species data processed with automated audio-recognition software},
  author={Knight, Elly C and Bayne, Erin M},
  journal={Bioacoustics},
  volume={28},
  number={6},
  pages={539--554},
  year={2019},
  publisher={Taylor \& Francis}
}

@article{shonfield2018utility,
  title={Utility of automated species recognition for acoustic monitoring of owls},
  author={Shonfield, Julia and Heemskerk, Sarah and Bayne, Erin M},
  journal={Journal of Raptor Research},
  volume={52},
  number={1},
  pages={42--55},
  year={2018},
  publisher={The Raptor Research Foundation, Inc.}
}

@article{lovett2013peepers,
  title={When do peepers peep? Climate and the date of first calling in the Spring Peeper (Pseudacris crucifer) in Southeastern New York State},
  author={Lovett, Gary M},
  journal={Northeastern Naturalist},
  volume={20},
  number={2},
  pages={333--340},
  year={2013},
  publisher={BioOne}
}

@article{ackleh2010measuring,
  title={Measuring and modeling the seasonal changes of an urban Green Treefrog (Hyla cinerea) population},
  author={Ackleh, Azmy S and Carter, Jacoby and Cole, Lauren and Nguyen, Tom and Monte, Jay and Pettit, Claire},
  journal={Ecological Modelling},
  volume={221},
  number={2},
  pages={281--289},
  year={2010},
  publisher={Elsevier}
}

@article{mackenzie2009modeling,
  title={Modeling species occurrence dynamics with multiple states and imperfect detection},
  author={MacKenzie, Darryl I and Nichols, James D and Seamans, Mark E and Guti{\'e}rrez, RJ},
  journal={Ecology},
  volume={90},
  number={3},
  pages={823--835},
  year={2009},
  publisher={Wiley Online Library}
  }

  @article{devarajan2020multi,
  title={Multi-species occupancy models: Review, roadmap, and recommendations},
  author={Devarajan, Kadambari and Morelli, Toni Lyn and Tenan, Simone},
  journal={Ecography},
  volume={43},
  number={11},
  pages={1612--1624},
  year={2020},
  publisher={Wiley Online Library}
}

@article{oksanen2010canonical,
  title={Canonical analysis of principal coordinates: a useful method of constrained ordination for ecology},
  author={Oksanen, Jari and Blanchet, Frank G and Kindt, Roeland and Legendre, Pierre and Minchin, Peter R and O'Hara, Robert B and Simpson, Gavin L and Solymos, Peter and Stevens, M Henry H and Szoecs, Eduard and Wagner, Helene},
  journal={Ecology},
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  number={3},
  pages={597--611},
  year={2010},
  publisher={Wiley Online Library},
  doi={10.1890/10-0340.1}
}

@article{shannon1948mathematical,
  title={A mathematical theory of communication},
  author={Shannon, Claude Elwood},
  journal={The Bell system technical journal},
  volume={27},
  number={3},
  pages={379--423},
  year={1948},
  publisher={Nokia Bell Labs}
}