BUG: Fix deprecation error in featureextractor

After recent merging of voxelwise extraction, API to a calculate features has changed from `calculateFeatures` to `execute`, this was correctly changed in feature extractor for the calculation of firstorder and texture features, but not for shape features.
AIM-Harvard · Jun 19, 2018 · da1fc16 · da1fc16
1 parent 1ec4fd6
commit da1fc16
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/radiomics/featureextractor.py b/radiomics/featureextractor.py
@@ -407,8 +407,7 @@ def execute(self, imageFilepath, maskFilepath, label=None, voxelBased=False):
           for feature in enabledFeatures:
             shapeClass.enableFeatureByName(feature)
 
-        shapeClass.calculateFeatures()
-        for (featureName, featureValue) in six.iteritems(shapeClass.featureValues):
+        for (featureName, featureValue) in six.iteritems(shapeClass.execute()):
           newFeatureName = 'original_shape_%s' % featureName
           featureVector[newFeatureName] = featureValue