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DESCRIPTION
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DESCRIPTION
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Package: DNAModAnnot
Type: Package
Title: Toolbox for DNA Modifications filtering and annotation
Version: 0.0.0.9019
Authors@R:
person(given = "Alexis",
family = "Hardy",
role = c("aut", "cre"),
email = "alexis.hardy1994@outlook.fr")
Description: Use modifications detection output (from
kineticsTools using PacBio sequencing data; or from
DeepSignal using Nanopore data) to filter out
potential false positives and analyze the distribution
of DNA modifications in the genome assembly provided.
Aligned Illumina sequencing data (bam files) can also be
used for analysis.
License: GPL-3
Depends: R (>= 4.0.0)
Imports: methods, Biostrings (>= 2.10.0), GenomicRanges (>= 1.38.0), BSgenome (>= 1.28.0), Biobase (> 2.1.0),
BiocGenerics (>= 0.34.0), GenomeInfoDb (>= 1.14.0), Gviz (>= 1.29.1), IRanges (>= 2.20.0),
seqLogo (>= 1.56.0), grid (>= 4.0.2),
S4Vectors (>= 0.24.0), data.table (>= 1.13.0), rtracklayer (>= 1.30.0), Rsamtools (>= 2.0.0)
Suggests:
knitr,
GenomicAlignments
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
RoxygenNote: 7.1.2
VignetteBuilder: knitr