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NEWS.txt
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NEWS.txt
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CHANGES IN VERSION 0.0.0.9019
-------------------------
BUG FIXES
o Frac, FracLow and FracUp values are not required anymore when importing
PacBio GFF file.
CHANGES IN VERSION 0.0.0.9018
-------------------------
NEW FEATURES
o Additional optional arguments were provided for the DrawModLogo
function, allowing the user to label some positions and to modify the
axis and labels.
o The DrawLogoPosNegAxes function has been added and is mostly adapted
from functions from the seqLogo package. This function is directly
used by the updated DrawModLogo function.
SIGNIFICANT USER-VISIBLE CHANGES
o Logolas dependency has been replaced by the seqLogo and grid packages.
o The DrawModLogo function has been reworked using seqLogo and grid:
cLogoType argument has been removed (the cYunit and lPlotNegYAxis
arguments should be used instead), cColorsCTAG argument has been
replaced by the cColorsACGT to be more consistent with the
nGenomicBgACGT argument, and default color values have been modified.
o lFiltParam argument has been removed from the FiltPacBio and
FiltDeepSignal functions: the parameter will be filtered using
intervals as long as nFiltParamLoBoundaries and nFiltParamHiBoundaries
arguments are provided.
BUG FIXES
o Various bug fixes and documentation updates.
CHANGES IN VERSION 0.0.0.9017
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