Some Deep Planes Have issues with segmentation

[Ahad-Allen]

[Ahad-Allen]

Tracked with AllenInstitute/AllenSDK#2683

[Ahad-Allen]

Currently testing the patch released by the sdk team, but running into some issues because their version of the cell processing file seems to have been updated since our version of the sdk. I will need to update our branch's imports and local files accordingly.

[Ahad-Allen]

Sam released a patch that I am trying now. Originally the problem with the older version of the branch was that the ophys timestamps were not being used after being pulled and were instead being pulled from the dff file.

[Ahad-Allen]

The patch worked and I was able to succesfully add raw data to the files and upload them to dandi! The files are located at https://dandiarchive.org/dandiset/000336/draft/files?location=sub-641331

[jeromelecoq]

Lots of planes were uploaded
Carter to make summary table using the notebook and send this to the team for validation.

[jeromelecoq]

The problem was related to dff being empty. We will use the metadata table from Carter to confirm that all experiment were uploaded

[jeromelecoq]

This was fixed, @Ahad-Allen will make a PR to contain the final uploading code.