index.rst

API Reference

This is the API reference of DRCME. If you are interested in running standard analysis tasks, please look at the scripts reference page <scripts> for more information.

drcme

scripts

drcme.ephys_morph_clustering: Combined electrophysiology and morphology clustering

drcme.ephys_morph_clustering

Functions

drcme

ephys_morph_clustering.clustjaccard ephys_morph_clustering.coclust_rates ephys_morph_clustering.consensus_clusters ephys_morph_clustering.gmm_combo_cluster_calls ephys_morph_clustering.hc_nn_cluster_calls ephys_morph_clustering.hc_combo_cluster_calls ephys_morph_clustering.refine_assignments ephys_morph_clustering.spectral_combo_cluster_calls ephys_morph_clustering.subsample_run

drcme.load_data: Data handling of IPFX outputs

drcme.load_data

Functions

drcme

load_data.define_spca_parameters load_data.load_h5_data

drcme.post_gmm_merging: Merging Gaussian mixture model components

drcme.post_gmm_merging

Functions

drcme

post_gmm_merging.entropy_combi post_gmm_merging.entropy_specific_merges post_gmm_merging.fit_piecewise post_gmm_merging.order_new_labels

drcme.prediction: Type label prediction

drcme.prediction

Functions

drcme

prediction.rf_predict

drcme.spca: Sparse principal component analysis

drcme.spca

Functions

drcme

spca.consolidate_spca spca.orig_mean_and_std_for_zscore spca.select_data_subset spca.spca_on_all_data spca.spca_transform_new_data spca.spca_zht

drcme.tsne: t-SNE helper functions

drcme.tsne

Functions

drcme

tsne.combined_tsne tsne.dual_modal_tsne