Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Run time optimisation with AUC-Score #2

Open
Arn-BAuA opened this issue Jul 14, 2023 · 1 comment
Open

Run time optimisation with AUC-Score #2

Arn-BAuA opened this issue Jul 14, 2023 · 1 comment
Assignees
Labels
enhancement New feature or request

Comments

@Arn-BAuA
Copy link
Owner

The method for the AUC-Score calculation runs very poorly. It would be great to implement an adaptive quadrature in C++ and include it as a submodule to substitute the current version of the calculation.

@Arn-BAuA Arn-BAuA added the enhancement New feature or request label Jul 14, 2023
@Arn-BAuA Arn-BAuA self-assigned this Jul 14, 2023
@Arn-BAuA
Copy link
Owner Author

Arn-BAuA commented Jul 31, 2023

Update: Upon researching the AUC-Score I found out, that the AUC-Score is identical to the Wilcoxon–Mann–Whitney test (Hanley, James A and McNeil, Barbara J: The meaning and use of the area under a receiver operating characteristic (ROC) curve. DOI: https://doi.org/10.1148/radiology.143.1.7063747). Computing the AUC-Score via quadrature from the ROC is in deed a bad idea. Not only does it introduce errors from the numeric integration, it also completely ignores the statistic errors that emerge from the sampling of the underlying distributions of normal and abnormal data. So instead of a quadrature error, like we are reporting at the moment, the correct way of reporting the error would be to use a statistic estimate for the variance like the one proposed by Qing Wang, Alexandria Guo (Qing Wang, Alexandria Guo: An efficient variance estimator of AUC and its applications
to binary classification: DOI: 10.1002/sim.8725). We will create a python version based on their work in the following days to evaluate AUC and the uncertainty for the AUC.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant