Fasta-notes is a Common lisp tool for DNA data sonification it provides several functions for converting Fasta files to SuperCollider patterns.
Export to other computer music enviroments as Pure Data or Max/MSP planned to the future.
Clone this repo to you quicklisp/local-projects directory.
Ex: git clone https://github.com/bjornmossa/cl-fasta-to-notes.git ~/quicklisp/local-projects
With version 1.3.0 it is possible to make a binary. For building go to project directory and run make script
cd ~/quicklisp/local-projects/cl-fasta-to-notes && make build
After build process completed you can run programm in terminal:
~/quicklisp/local-projects/cl-fasta-to-notes/build/fasta-notes
If there is no permission set permissions for execution with
chmod +x PATH_TO_BINARY
Run programm with:
~/quicklisp/local-projects/cl-fasta-to-notes/build/fasta-notes
load-file - Read and process .fasta file file-info - Show file basic information, organism name, number of codons and nucleotides show-sequence - Show selected codons range as scale degrees and values save-sequence - Save selected codons range as scale degrees and value to file
help - Print the help of all available commands. quit - Quit the application.
You can use TAB for auto complete
With sbcl repl run (ql:quickload :fasta-notes)
At first you need to download a .fasta file with dna data. This package works with files from https://www.ncbi.nlm.nih.gov/nuccore for shure. Please, create an issue is you can not load a file.
For all user interruptions use fasta-notes.user package.
(in-package :fasta-notes.user)For loading file use
(load-file)And follow instructions.
For getting basic info about loaded file use
(file-info)If you wand to check a sequence without saving use
(show-sequence)In fasta-notes.user package use
(save-sequence)NB: During refactoring to faste-notes.user package LilyPond export NOT working. If you need it, please create an issue or PR using SuperCollider export as example.
GNU GPLv3
