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Expand Up @@ -38,15 +38,15 @@ To get a feeling for how to use Dmipy, we provide a few tutorial notebooks:

## Explanations and Illustrations of Dmipy Contents
### Biophysical Models and Distributions
- [Cylinder models (Axons)](https://github.com/AthenaEPI/mipy/blob/master/examples/example_cylinder_models.ipynb)
- [Sphere Models (Tumor cells)](https://github.com/AthenaEPI/mipy/blob/master/examples/example_sphere_models.ipynb)
- [Parameter distribution models (Gamma)](https://github.com/AthenaEPI/mipy/blob/master/examples/example_diameter_distributions.ipynb)
- [Gaussian models (Extra-axonal)](https://github.com/AthenaEPI/mipy/blob/master/examples/example_gaussian_models.ipynb)
- [Spherical Distribution models (Axon Dispersion)](https://github.com/AthenaEPI/mipy/blob/master/examples/example_watson_bingham.ipynb)
- [Cylinder models (Axons, e.g. [Assaf et al. 2004])](https://github.com/AthenaEPI/mipy/blob/master/examples/example_cylinder_models.ipynb)
- [Sphere Models (Tumor cells, e.g. [Panagiotaki et al. 2014])](https://github.com/AthenaEPI/mipy/blob/master/examples/example_sphere_models.ipynb)
- [Parameter distribution models (Axon Diameter Distribution, e.g. [Assaf et al. 2008])](https://github.com/AthenaEPI/mipy/blob/master/examples/example_diameter_distributions.ipynb)
- [Gaussian models (Extra-axonal, e.g. [Behrens et al. 2003])](https://github.com/AthenaEPI/mipy/blob/master/examples/example_gaussian_models.ipynb)
- [Spherical Distribution models (Axon Dispersion, e.g. [Kaden et al. 2007])](https://github.com/AthenaEPI/mipy/blob/master/examples/example_watson_bingham.ipynb)
- [Spherical Mean Models](https://github.com/AthenaEPI/mipy/blob/master/examples/example_spherical_mean_models.ipynb)
### Global Optimizers
- Brute Force (Brute2Fine)
- Stochastic (MIX)
- Stochastic (MIX) [Farooq et al. 2016]
## Dmipy implementations of Microstructure Models in Literature
Dmipy uses HCP data to illustrate microstructure model examples. To reproduce these examples, Dmipy provides a direct way to download HCP data (using your own AWS credentials) in the [HCP tutorial](https://github.com/AthenaEPI/mipy/blob/master/examples/tutorial_human_connectome_project_aws.ipynb).
### Single Bundle Microstructure Models
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