I have created dozens of genome files and this situation has occurred. How can I solve it. #87
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29-Feb-2024 02:22:17 Created gca_001720945cyc directory tree. [Processed 4 data rows from file /home/chencong/ptools-local/pgdbs/user/gca_001720945cyc/1.0/input/genetic-elements.dat] [Processed 1 data frames] Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from Extracting one sequence from The error message was: batch-pathologic: A fatal error occurred for /home/chencong/zs/GCA_001720945/ version 1.0. ->(TPL::ZOOM-COMMAND :FROM-READ-EVAL-PRINT-LOOP NIL ...) |
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;; Optimization settings: safety 3, space 1, speed 1, debug 3. ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: *** This Pathway Tools executable built on Wed Apr 13, 2022 at 17:30:22. *** [Redirecting standard-output and error-output to /home/chencong/zs/GCA_001720945/pathologic.log] |
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Hi @ChenCongZ, The issue comes from your file |
Hi @ArnaudBelcour,
The error message was:
In SUBSEQ, `end' (20) is beyond the end of the sequence (6).
batch-pathologic: A fatal error occurred for /home/chencong/zs/GCA_001720945/ version 1.0.
See pathologic log file /home/chencong/zs/GCA_001720945/pathologic.log for more details.
29-Feb-2024 02:22:23 Fatal error: In SUBSEQ, `end' (20) is beyond the end of the sequence (6).
Evaluation stack:
->(TPL::ZOOM-COMMAND :FROM-READ-EVAL-PRINT-LOOP NIL ...)
(SYS::..RUNTIME-OPERATION "applyn" :UNKNOWN-ARGS)
pathologic.log
Uploading pwt_terminal.log…
(TPL:DO-COMMAND "zoom" :FROM-READ-EVAL-PRINT-LOOP ...)
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