build_test_env.sh

#!/bin/sh

echo "Running cleanup"
sh cleanup.sh > /dev/null 2>&1

set -e

git clone git@github.com:Ayuei/go-clinical-indexer.git

echo "Extracting test data"
tar -xf test_set.tar.gz

docker build -t "debir/test:0.1" .
docker run -d -p 9200:9200 -p 9300:9300 -e "discovery.type=single-node" -e "xpack.security.enabled=false" -e "xpack.security.http.ssl.enabled=false" --name elasticsearch_debir_test elasticsearch:8.4.1
docker run --network host --name indexer_test_elasticsearch debir/test:0.1

cd ..

python -m pip install .
python -m pip install https://s3-us-west-2.amazonaws.com/ai2-s2-scispacy/releases/v0.5.0/en_core_sci_md-0.5.0.tar.gz
python ./examples/indexing/create_semantic_index.py --fields Text -d 100_000 -w 2 -b 100 tests/config.toml tests/nir_config.toml