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BALLAXY project

Using BALL in Galaxy

This folder contains a BALL dependent subproject to enable Galaxy workflow support for BALL TOOLS. The project is configured and included by the top level BALL project. It is available as build target ballaxy and excluded from default build targets.

The following configure options are provided as CMake flags:

  • BALL_BUILD_BALLAXY (default: ON):

    Builds required Galaxy ToolConfigs to include BALL TOOLS in a Galaxy instance. Additionally, build the BALLAXY plugin for BALLView, if required dependencies are met (Qt5 WebEngine, BALL VIEW target available)

  • BALLAXY_INSTANCE (default: OFF):

    Additionally, create a fully configured Galaxy instance that includes BALLAXY. If ballaxy target has successfully been built, the Galaxy instance can be started using the bash script run_ballaxy.sh from the projects binary dir (usually 'ball_build_dir/workflow_support/galaxy/').

  • GALAXY_RELEASE (default: 'release_16.10'):

    If a full Galaxy instance is created (BALLAXY_INSTANCE=ON), this parameter can be used to specify the Galaxy release to be used. In fact, this string has to be a valid branch name of the Galaxy GitHub repository.

For a detailed description how a working Ballaxy instance can be setup using the BALL Galaxy ToolConfigs, please have a look at the corresponding Galaxy documentation and a configured BALLAXY setup script for a full ballaxy instance (ball_build_dir/workflow_support/galaxy/ballaxy_generator.cmake).