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Analysis fails when blast database files do not already exist #25

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dfornika opened this issue Jul 2, 2024 · 0 comments · Fixed by #26
Closed

Analysis fails when blast database files do not already exist #25

dfornika opened this issue Jul 2, 2024 · 0 comments · Fixed by #26

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@dfornika
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dfornika commented Jul 2, 2024

FluViewer has a feature to check whether or not a BLAST database has already been made based on the FluViewer fasta database file. If it hasn't then FluViewer will run makeblastdb to make it on-the-fly before proceeding.

We're using the run() function from the fluviewer.analysis module to do that here:

return_code = run(terminal_command, outdir, out_name, process_name, error_code)

...but we're not importing that module so we get:

NameError: name 'run' is not defined
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