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NLPTOFHIR Annotator Error #13

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RokshanJ opened this issue Mar 1, 2021 · 1 comment
Open

NLPTOFHIR Annotator Error #13

RokshanJ opened this issue Mar 1, 2021 · 1 comment

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@RokshanJ
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RokshanJ commented Mar 1, 2021

@qqndrew I am getting this error while running Annotator main class

Exception in thread "main" org.apache.uima.resource.ResourceInitializationException: Invalid value for parameter "InputDirectory" in component "edu.mayo.bsi.nlp2fhir.preprocessors.FHIRXMIFileSystemReader" -- directory "xmis" does not exist.
at org.apache.ctakes.core.cr.XmiCollectionReaderCtakes.initialize(XmiCollectionReaderCtakes.java:81)
at org.apache.uima.collection.CollectionReader_ImplBase.initialize(CollectionReader_ImplBase.java:70)
at org.apache.uima.impl.CollectionReaderFactory_impl.produceResource(CollectionReaderFactory_impl.java:103)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:331)
at org.apache.uima.UIMAFramework.produceCollectionReader(UIMAFramework.java:812)
at org.apache.uima.fit.pipeline.SimplePipeline.runPipeline(SimplePipeline.java:133)
at edu.mayo.bsi.nlp2fhir.Pipeline.main(Pipeline.java:114)

@qqndrew
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qqndrew commented Mar 4, 2021

This error typically suggests that the directory parameter you supplied for input does not exist.

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