scripts

Command Line Conversion Tools

The scripts directory contains the following command line utilities:

1. generate_i2b2 -- load the FHIR Metadata Vocabulary (fhir.ttl) into the concept_dimension, modifier_dimension and ontology tables.
2. loadfacts -- load FHIR JSON or FHIR RDF into the i2b2 observation_fact, patient_dimension, visit_dimension, patient_mapping and encounter_mapping tables.
3. removefacts -- remove the records specified by a particular upload_id from the observation_fact and associated tables.
4. conf_file -- generate configuration files for frequently used parameters.