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_config.yml
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_config.yml
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exclude:
- Gemfile
- Gemfile.lock
- node_modules
- vendor/bundle/
- vendor/cache/
- vendor/gems/
- vendor/ruby/
- any_additional_item
- README.md
# Site settings
title: BIDS Apps
description: 'portable neuroimaging pipelines that understand BIDS datasets'
url: 'http://bids-apps.neuroimaging.io/'
baseurl: ''
# google_analytics: 'UA-XXXXXX-X'
disqus_shortname: 'bids-apps'
author:
name: 'Chris Gorgolewski'
#github_username: BIDS-Apps
defaults:
-
scope:
path: ''
type: 'posts'
values:
layout: 'post'
# Build settings
destination: _site
paginate: 10
permalink: /:year/:title/
markdown: kramdown
highlighter: rouge
kramdown:
# use Github Flavored Markdown
input: GFM
# do not replace newlines by <br>s
hard_wrap: false
gems: ['jekyll-paginate']
apps:
- gh: 'BIDS-Apps/example'
dh: 'bids/example'
- gh: 'BIDS-Apps/freesurfer'
dh: 'bids/freesurfer'
- gh: 'BIDS-Apps/ndmg'
dh: 'bids/ndmg'
- gh: 'BIDS-Apps/BROCCOLI'
dh: 'bids/broccoli'
- gh: 'BIDS-Apps/FibreDensityAndCrosssection'
dh: 'bids/fibredensityandcrosssection'
- gh: 'BIDS-Apps/SPM'
dh: 'bids/spm'
- gh: 'poldracklab/mriqc'
dh: 'poldracklab/mriqc'
- gh: 'BIDS-Apps/QAP'
dh: 'bids/qap'
- gh: 'BIDS-Apps/CPAC'
dh: 'bids/cpac'
- gh: 'BIDS-Apps/hyperalignment'
dh: 'bids/hyperalignment'
- gh: 'BIDS-Apps/mindboggle'
dh: 'bids/mindboggle'
- gh: 'BIDS-Apps/MRtrix3_connectome'
dh: 'bids/mrtrix3_connectome'
- gh: 'BIDS-Apps/rs_signal_extract'
dh: 'bids/rs_signal_extract'
- gh: 'BIDS-Apps/aa'
dh: 'bids/aa'
- gh: 'BIDS-Apps/niak'
dh: 'bids/niak'
- gh: 'BIDS-Apps/oppni'
dh: 'bids/oppni'
- gh: 'nipreps/fmriprep'
dh: 'nipreps/fmriprep'
- gh: 'BIDS-Apps/brainiak-srm'
dh: 'bids/brainiak-srm'
- gh: 'BIDS-Apps/nipypelines'
dh: 'bids/nipypelines'
- gh: 'BIDS-Apps/HCPPipelines'
dh: 'bids/hcppipelines'
- gh: 'BIDS-Apps/MAGeTbrain'
dh: 'bids/magetbrain'
- gh: 'BIDS-Apps/tracula'
dh: 'bids/tracula'
- gh: 'BIDS-Apps/baracus'
dh: 'bids/baracus'
- gh: 'BIDS-Apps/antsCorticalThickness'
dh: 'bids/antscorticalthickness'
- gh: 'BIDS-Apps/DPARSF'
dh: 'bids/dparsf'
- gh: 'BIDS-Apps/afni_proc'
dh: 'bids/afni_proc'
- gh: 'BIDS-Apps/rsHRF'
dh: 'bids/rshrf'
- gh: 'BIDS-Apps/PyMVPA'
dh: 'bids/pymvpa'
- gh: 'PennBBL/qsiprep'
dh: 'pennbbl/qsiprep'
- gh: 'sebastientourbier/multiscalebrainparcellator'
dh: 'sebastientourbier/multiscalebrainparcellator'
- gh: 'connectomicslab/connectomemapper3'
dh: 'sebastientourbier/connectomemapper-bidsapp'
- gh: 'PeerHerholz/BIDSonym'
dh: 'peerherholz/bidsonym'
- gh: 'Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit'
dh: 'sebastientourbier/mialsuperresolutiontoolkit'
- gh: 'khanlab/hippunfold'
dh: 'khanlab/hippunfold'
- gh: 'MICA-MNI/micapipe'
dh: 'micalab/micapipe'