Update to nf-core/bacass v2.3.0 and Adjust Paths

[Daniel-VM]

There is a new version of nf-core/bacass: v2.3.0. This version includes the integration of KmerFinder and custom MultiQC. The remaining tasks are:

• Set up the latest version in the pipelines/ folder by cloning it directly from the nf-core/bacass repository (since the current version is from a forked repo).
• Update Nextflow Run Path: Adjust the nextflow run path in the affected templates/lablogs (i.e: assembly) to reflect the updated directory.
• Update the repo URL in services.json

[victor5lm]

With #299:

• Set up the latest version in the pipelines/ folder by cloning it directly from the nf-core/bacass repository (since the current version is from a forked repo).

• Both pipelines and pipelines_new folders have the latest version of bacass.

• Update Nextflow Run Path: Adjust the nextflow run path in the affected templates/lablogs (i.e: assembly) to reflect the updated directory.

• Assembly's lablog file has been updated.

• Update the repo URL in services.json

• services.json has been updated with the new repo URL.