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Examples

If you don't have PWS experimental data to run these examples with you can find a dataset that is used for automated testing on Zenodo here: https://zenodo.org/record/5976039#.Yf6aPt_MJPY

Running basic PWS analysis on a single image.

This example runs the PWS analysis on a single measurement. The results of the analysis will be saved alongside the raw data under the analyses folder. Running this example may be required in order for other examples which require that analysis results already be available.

../../examples/runPWSAnalysis.py

Performing FFT to visualize the estimated depth of cell features

../../examples/opdExampleScript.py

image

Compile analysis results to a table of average values within each ROI

../../examples/compileResults.py

Basic loading of ROI's to extract data from specific regions

../../examples/roiUsageExample.py

Using a hand-drawn ROI to generate a reference pseudo-measurement

../../examples/ROItoReference.py

Blurring data laterally to smooth a reference image.

../../examples/syntheticReference.py

Measuring Sigma using only a limited range of the OPD signal.

../../examples/limitedOPDSigma.py

Generating new position lists to enable colocalized measurements on multiple systems. --------------------------------------------------------------.. literalinclude:: ../../examples/positionTransformation.py :language: python :linenos: