- UI updates to the AutoAnotate creation dialog.
- Option to label clusters using the name of the most significant node in the cluster.
- New slider that alows to choose the granularity of the clusters.
- Support for using the MCODE app to find clusters in the network.
- Thumbnail view at the bottom of the cluster panel.
- Slider at bottom of cluster panel that allows to show/hide nodes according to their significance.
- Better integration with EnrichmentMap.
- Advanced options section in the Display Options panel.
- Bug fixes.
- Requires Cytoscape 3.9
- Display option for fill color palettes.
- Display option for cluster padding.
- Summary networks have improved attribute aggregation.
- Attribute aggregation now works for edges as well as nodes.
- There is a new settings dialog that shows when creating a summary network.
- Attribute aggregation settings can be specified for each individual column.
- Summary networks have improved integration with the EnrichmentMap App.
- New default aggregators for EnrichmentMap columns that make more sense.
- Summary networks work with the EnrichmentMap Heat Map panel.
- Improved support for hidden nodes and edges.
- Hiding nodes causes the clusters to resize to the visible nodes.
- Hidden nodes and edges are ignored by clustering algorithms.
- Several bug fixes
- Requires Cytoscape 3.7
- Drawing annotations is much faster
- Word Wrap feature for cluster labels
- New Feature: copy annotations to another network
- Support for column namespaces
- “annotate” command now returns JSON
- Cleaner layout for “quick start” panel
- Cleaner layout for “display options” panel
- Cleaner menu layouts
- Several bug fixes