TODO: describe the individual steps
- str8path
- HOLE
- HOLLOW (custom version)
Use pdb2pqr to generate the input PQR file.
- ...
- membrane position
- exclusion zone
Discuss example, highlight what needs to be customized and how.
- ::
apbs-bornprofile-mplaceion
Manually or typically through a queuing system.
- ::
apbs-bornprofile-analyze
Distinguish 1D/3D.
Talk about using Chimera to analyze 3D energy landscapes and add some tips & tricks.