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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Unreleased

[1.0.1a1] - 2021-12-07

Added

  • New entry points: db make, db dump, db info, db merge, and db_reindex.
  • Module io with parsing functions for output generated via oligo-melting, hush, or OligoArrayAux.
  • Assert for compatibility with a given dtype. (only max value currently checked)

Changed

  • New database format.
  • dbchk entry point changed to db check.
  • Dropped sequence length column, as it can be inferred from the end/start columns.
  • Removed -X default from query.

[1.0.0-alpha] - 2021-02-26

[1.0.1a1] https://github.com/ggirelli/ifpd2/releases/tag/v1.0.1a1
[1.0.0-alpha] https://github.com/ggirelli/ifpd2/releases/tag/v1.0.0-alpha

Changes by Zafer Kosar

Fix the relative imports

  • imports literally relied on the previous installations (not the local one)
    • lack of modularity and compatibiliy
  • change logging.py to loggingg with double 'g' to prevent import problems due to built in logging library.

Make it into stand alone repo

https://github.com/BiCro-HT/ifpd2_new for further ease of use and modularity.

Rename the package as ifpd2q (q as in Quentin's version) * this way we can make it pip installable as there is already another ifpd2 on PyPi by GGirelli.