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DESCRIPTION
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DESCRIPTION
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Package: Coxmos
Title: Cox MultiBlock Survival
Version: 1.0.4
Authors@R:
c(person("Pedro", "Salguero García", , "pedrosalguerog@gmail.com", role = c("aut", "cre", "rev"),
comment = c(ORCID = "0000-0002-1879-3374")),
person("Sonia", "Tarazona Campos", , "sotacam@eio.upv.es", role = c("ths")),
person("Ana", "Conesa Cegarra", , "ana.conesa@csic.es", role = c("ths")),
person("Kassu", "Mehari Beyene", , "kasu.beyene@uclouvain.be", role = c("ctb")),
person("Luis", "Meira Machado", , "", role = c("ctb")),
person("Marta", "Sestelo", , "", role = c("ctb")),
person("Artur", "Araújo", , "", role = c("ctb"))
)
Maintainer: Pedro Salguero García <pedrosalguerog@gmail.com>
Description: This software package provides Cox survival analysis for high-dimensional and multiblock datasets.
It encompasses a suite of functions dedicated from the classical Cox regression to newest analysis,
including Cox proportional hazards model, Stepwise Cox regression, and Elastic-Net Cox regression,
Sparse Partial Least Squares Cox regression (sPLS-COX) incorporating three distinct strategies,
and two Multiblock-PLS Cox regression (MB-sPLS-COX) methods. This tool is designed to adeptly handle
high-dimensional data, and provides tools for cross-validation, plot generation, and additional resources
for interpreting results. While references are available within the corresponding functions,
key literature is mentioned below.
Terry M Therneau (2024) <https://CRAN.R-project.org/package=survival>,
Noah Simon et al. (2011) <doi:10.18637/jss.v039.i05>,
Philippe Bastien et al. (2005) <doi:10.1016/j.csda.2004.02.005>,
Philippe Bastien (2008) <doi:10.1016/j.chemolab.2007.09.009>,
Philippe Bastien et al. (2014) <doi:10.1093/bioinformatics/btu660>,
Kassu Mehari Beyene and Anouar El Ghouch (2020) <doi:10.1002/sim.8671>,
Florian Rohart et al. (2017) <doi:10.1371/journal.pcbi.1005752>.
URL: https://github.com/BiostatOmics/Coxmos
BugReports: https://github.com/BiostatOmics/Coxmos/issues
License: CC BY 4.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews:
Depends:
R (>= 4.1.0),
Imports:
caret,
cowplot,
furrr,
future,
ggrepel,
ggplot2,
ggpubr,
glmnet,
MASS,
mixOmics,
progress,
purrr,
Rdpack,
scattermore,
stats,
survcomp,
survival,
survminer,
svglite,
tidyr,
utils
Suggests:
nsROC,
smoothROCtime,
survivalROC,
risksetROC,
ggforce,
knitr,
RColorConesa,
rmarkdown
RdMacros:
Rdpack
LazyData: true
NeedsCompilation: yes
VignetteBuilder: knitr