You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, Boyle-Lab
I'm planning to use TRACE to determine plant cis factor TF binding.
And I'll use constructed de novo fragemnted genome of Mesembryanthemum crystallinum L.
According to your paper(https://www.biorxiv.org/content/10.1101/801001v1.full#ref-4), it seems that TRACE is suitable for only the human complete genome.
If you know the way to use TRACE for plant fragmented genomes, I would like you to tell me.
Best Regards.
The text was updated successfully, but these errors were encountered:
You should be able to use TRACE just fine on any genome, including a plant genome. The only change from the instructions here in github are that you will need a custom motif file (and cluster file if you want) using motifs from your organism (or maybe just general plant PWMs). See this section: https://github.com/Boyle-Lab/TRACE#build-an-initial-trace-model
Hi, Boyle-Lab
I'm planning to use TRACE to determine plant cis factor TF binding.
And I'll use constructed de novo fragemnted genome of Mesembryanthemum crystallinum L.
According to your paper(https://www.biorxiv.org/content/10.1101/801001v1.full#ref-4), it seems that TRACE is suitable for only the human complete genome.
If you know the way to use TRACE for plant fragmented genomes, I would like you to tell me.
Best Regards.
The text was updated successfully, but these errors were encountered: