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Brent Lab

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  1. NetProphet_2.0 NetProphet_2.0 Public

    A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.

    R 12 5

  2. Dual_Threshold_Optimization Dual_Threshold_Optimization Public

    Dual threshold optimization for identifying convergent evidence: TF binding locations and TF perturbation responses.

    Python 3 1

  3. TFA-evaluation TFA-evaluation Public

    Python 2 1

  4. TFPertRespExplainer TFPertRespExplainer Public

    Predict genes' response to perturbations and explains which genomic factors determine the response predictions.

    Jupyter Notebook 2 1

  5. NetProphet_3.0 NetProphet_3.0 Public

    R 2 1

  6. Twinscan Twinscan Public

    Twinscan is a suite of software for gene-structure prediction. Twinscan is currently available for Mammals, Caenorhabditis (worm), Dicot plants, and Cryptococci.

    C 2

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