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Only json file creation #99

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arefks opened this issue Nov 9, 2022 · 2 comments
Open

Only json file creation #99

arefks opened this issue Nov 9, 2022 · 2 comments
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enhancement New feature or request

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@arefks
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arefks commented Nov 9, 2022

Is your feature request related to a problem? Please describe.
Not a problem specifically. I am interested only in the JSON files. Is there a solution to how to do this?

Describe the solution you'd like
A flag that could suppress the creation of the nii files, or a flag that would ONLY create the corresponding JSON files.

Describe alternatives you've considered
A clear and concise description of any alternative solutions or features you've considered.

Additional context
Nice Tool

@dvm-shlee
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@arefks Could you provide more detail about what function you want to have?
For example, do you want to generate JSON on BIDS? or for a single NII file you already converted?

@arefks
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arefks commented Nov 15, 2022

@dvm-shlee
I have a huge longitudinal dataset with raw mri imaging files. I have already transformed them to NII long time ago with a specific naming/folder structure. (with the use of: https://github.com/aswendtlab/AIDAmri/blob/master/bin/conv2Nifti_auto.py ), As the NII files don't contain all of the meta information stored in the raw data, I wanted to add corresponding JSON files to each sequence. The thing I had in mind would be something like this:

brkraw tonii <input raw data> -b -d 

( with the d standing for deactivation of data conversion)
so now only the JSON files would be produced. I could sort them out myself afterward with the help of a short script.

I hope this was clear enough. Write me again if it needs more explanation.

@dvm-shlee dvm-shlee added the enhancement New feature or request label Jul 1, 2023
@dvm-shlee dvm-shlee added this to the v0.4.0 release milestone Jul 1, 2023
@dvm-shlee dvm-shlee self-assigned this Jan 31, 2024
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