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DESCRIPTION
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DESCRIPTION
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Package: shinyExprPortal
Title: A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data
Version: 1.1.0
Authors@R: person('Rafael', 'Henkin', email = 'r.henkin@qmul.ac.uk', role = c('cre', 'aut', 'cph'), comment = c(ORCID = '0000-0002-5511-5230'))
Maintainer: Rafael Henkin <r.henkin@qmul.ac.uk>
Description: Enables deploying configuration file-based 'shiny' apps with minimal programming for interactive exploration and analysis showcase of molecular expression data. For exploration, supports visualization of correlations between rows of an expression matrix and a table of observations, such as clinical measures, and comparison of changes in expression over time. For showcase, enables visualizing the results of differential expression from package such as 'limma', co-expression modules from 'WGCNA' and lower dimensional projections.
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
biocViews:
Imports:
config,
stats,
utils,
shiny,
htmltools,
markdown,
cli,
dplyr,
tidyr,
yaml,
data.table,
bslib,
iheatmapr,
vegawidget,
DT,
qvalue,
parallel,
Rfast,
rlang,
shinyhelper
Encoding: UTF-8
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE)
Suggests:
testthat (>= 3.0.0),
whisker,
knitr,
rmarkdown,
r2d3,
kableExtra,
RColorBrewer
VignetteBuilder: knitr
URL: https://c4tb.github.io/shinyExprPortal/, https://github.com/C4TB/shinyExprPortal
Config/testthat/edition: 3
BugReports: https://github.com/C4TB/shinyExprPortal/issues