Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Confused by the abundance values in the CAMI2 toy datasets #189

Closed
TakacsBertalan opened this issue May 6, 2024 · 1 comment
Closed

Comments

@TakacsBertalan
Copy link

Hi!
I would like to generate samples based on the distribution of the CAMI2 toy datasets (human gastrooral to be specific) and I am a bit confused by the abundance values in the abundance*.txt and distribution_*.txt files. I assumed that they were relative abundance values, as the Wiki and other issues in this repository seem to suggest. But simply adding up the values doesn't equal to 1 or 100, they sum up to 363. So right now I am a bit confused: where does this value come from?

Thanks,
Bertalan Takács

@AlphaSquad
Copy link
Collaborator

Hi,
"relative abundance" here just means that it describes the abundance relative to each other, the numbers themselves do not have a specific meaning though. You could divide all abundances by 3.63 and get abundances which sum up to 100 if you need this.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants