forked from ThomasMaxwell/UVIS_DV3D
/
ConfigurationFunctions.py
914 lines (776 loc) · 33.4 KB
/
ConfigurationFunctions.py
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'''
Created on May 9, 2014
@author: tpmaxwel
'''
import sys, vtk, cdms2, traceback, os, cdtime, cPickle, copy
from StringIO import StringIO
import numpy as np
import inspect
from weakref import WeakSet, WeakKeyDictionary
SLICE_WIDTH_LR_COMP = [ 'xlrwidth', 'ylrwidth', 'zlrwidth' ]
SLICE_WIDTH_HR_COMP = [ 'xhrwidth', 'yhrwidth', 'zhrwidth' ]
packagePath = os.path.dirname( __file__ )
defaultMapDir = os.path.join( packagePath, 'data' )
defaultOutlineMapFile = os.path.join( defaultMapDir, 'political_map.png' )
packagePath = os.path.dirname( __file__ )
defaultMapDir = os.path.join( packagePath, 'data' )
defaultLogoFile = os.path.join( defaultMapDir, 'uvcdat.jpg' )
defaultMapFile = os.path.join( defaultMapDir, 'earth2k.jpg' )
defaultMapCut = -180
SLIDER_MAX_VALUE = 100
MAX_IMAGE_SIZE = 1000000
class CDMSDataType:
Volume = 1
Slice = 2
Vector = 3
Hoffmuller = 4
ChartData = 5
VariableSpace = 6
Points = 7
class DataCache():
def __init__(self):
self.data = {}
self.cells = set()
def getDatatypeString( scalar_dtype ):
if scalar_dtype == np.ushort:
return 'UShort'
if scalar_dtype == np.ubyte:
return 'UByte'
if scalar_dtype == np.float32:
return 'Float'
if scalar_dtype == np.float64:
return 'Double'
return None
def getBool( val ):
if isinstance( val, str ):
if( val.lower()[0] == 't' ): return True
if( val.lower()[0] == 'f' ): return False
try: val = int(val)
except: pass
return bool( val )
def makeList( obj, minSize = 1 ):
if obj == None: return None
if isinstance( obj, tuple ): obj = list( obj )
if not isinstance( obj, list ): obj = [ obj ]
if ( len( obj ) == 1 ) and minSize > 1:
obj = obj*minSize
# assert len(obj) == minSize, "Wrong number of elements in list"
return obj
def deserialize_value( sval ):
if isinstance( sval, float ):
return sval
try:
return int(sval)
except ValueError:
try:
return float(sval)
except ValueError:
return sval
def get_value_decl( val ):
if isinstance( val, bool ): return "bool"
if isinstance( val, int ): return "int"
if isinstance( val, float ): return "float"
return "str"
def getMaxScalarValue( scalar_dtype ):
if scalar_dtype == np.ushort:
return 65535.0
if scalar_dtype == np.ubyte:
return 255.0
if scalar_dtype == np.float32:
f = np.finfo(np.float32)
return f.max
if scalar_dtype == np.float64:
f = np.finfo(np.float64)
return f.max
return None
class PlotType:
Planar = 0
Spherical = 1
List = 0
Grid = 1
LevelAliases = [ 'isobaric', "layers", "interfaces" ]
@classmethod
def validCoords( cls, lat, lon ):
return ( id(lat) <> id(None) ) and ( id(lon) <> id(None) )
@classmethod
def isLevelAxis( cls, pid ):
lname = pid.lower()
if ( lname.find('lev') >= 0 ): return True
if ( lname.find('bottom') >= 0 ) and ( lname.find('top') >= 0 ): return True
if pid in cls.LevelAliases: return True
if lname in cls.LevelAliases: return True
return False
@classmethod
def getPointsLayout( cls, grid ):
if grid <> None:
if (grid.__class__.__name__ in ( "RectGrid", "FileRectGrid") ):
return cls.Grid
return cls.List
def isDesignated( axis ):
return ( axis.isLatitude() or axis.isLongitude() or axis.isLevel() or axis.isTime() )
def matchesAxisType( axis, axis_attr, axis_aliases ):
matches = False
aname = axis.id.lower()
axis_attribute = axis.attributes.get('axis',None)
if axis_attribute and ( axis_attribute.lower() in axis_attr ):
matches = True
else:
for axis_alias in axis_aliases:
if ( aname.find( axis_alias ) >= 0):
matches = True
break
return matches
class SIGNAL(object):
def __init__( self, name = None ):
self._functions = WeakSet()
self._methods = WeakKeyDictionary()
self._name = name
def __call__(self, *args, **kargs):
# Call handler functions
for func in self._functions:
func(*args, **kargs)
# Call handler methods
for obj, funcs in self._methods.items():
for func in funcs:
func(obj, *args, **kargs)
def connect(self, slot):
if inspect.ismethod(slot):
if slot.__self__ not in self._methods:
self._methods[slot.__self__] = set()
self._methods[slot.__self__].add(slot.__func__)
else:
self._functions.add(slot)
def disconnect(self, slot):
if inspect.ismethod(slot):
if slot.__self__ in self._methods:
self._methods[slot.__self__].remove(slot.__func__)
else:
if slot in self._functions:
self._functions.remove(slot)
def clear(self):
self._functions.clear()
self._methods.clear()
class ConfigManager:
def __init__( self, **args ):
self.ConfigCmd = SIGNAL("ConfigCmd")
self.cfgFile = None
self.cfgDir = None
self.config_params = {}
self.iCatIndex = 0
self.cats = {}
self.metadata = args
def getMetadata(self, key=None ):
return self.metadata.get( key, None ) if key else self.metadata
def addParam(self, key ,cparm ):
self.config_params[ key ] = cparm
# print "Add param[%s]" % key
def saveConfig( self ):
try:
f = open( self.cfgFile, 'w' )
for config_item in self.config_params.items():
cfg_str = " %s = %s " % ( config_item[0], config_item[1].serialize() )
f.write( cfg_str )
f.close()
except IOError:
print>>sys.stderr, "Can't open config file: %s" % self.cfgFile
def addParameter( self, config_name, **args ):
cparm = ConfigParameter.getParameter( config_name, **args )
categoryName = args.get('category', None )
varname = args.get('varname', None )
key_tok = []
if categoryName: key_tok.append( categoryName )
key_tok.append( config_name )
if varname: key_tok.append( varname )
self.addParam( ':'.join( key_tok ), cparm )
return cparm
def readConfig( self ):
try:
f = open( self.cfgFile, 'r' )
while( True ):
config_str = f.readline()
if not config_str: break
cfg_tok = config_str.split('=')
parm = self.config_params.get( cfg_tok[0].strip(), None )
if parm: parm.initialize( cfg_tok[1] )
except IOError:
print>>sys.stderr, "Can't open config file: %s" % self.cfgFile
def initParameters(self):
if not self.cfgDir:
self.cfgDir = os.path.join( os.path.expanduser( "~" ), ".cpc" )
if not os.path.exists(self.cfgDir):
os.mkdir( self.cfgDir )
if not self.cfgFile:
self.cfgFile = os.path.join( self.cfgDir, "cpcConfig.txt" )
else:
self.readConfig()
for config_item in self.config_params.items():
self.ConfigCmd( ( "InitParm", config_item[0], config_item[1] ) )
def getParameterPersistenceList(self):
plist = []
for cfg_item in self.config_params.items():
key = cfg_item[0]
cfg_spec = cfg_item[1].pack()
plist.append( ( key, cfg_spec[1] ) )
return plist
def initialize( self, parm_name, parm_values ):
if not ( isinstance(parm_values,list) or isinstance(parm_values,tuple) ):
parm_values = [ parm_values ]
cfg_parm = self.config_params.get( parm_name, None )
if cfg_parm: cfg_parm.unpack( parm_values )
def getPersistentParameterSpecs(self):
plist = []
for cfg_item in self.config_params.items():
key = cfg_item[0]
values_decl = cfg_item[1].values_decl()
plist.append( ( key, values_decl ) )
return plist
def addCategory(self, cat_name ):
self.iCatIndex = self.iCatIndex + 1
self.cats[ self.iCatIndex ] = cat_name
return self.iCatIndex
class ConfigParameter:
def __init__(self, name, **args ):
self.name = name
self.ValueChanged = SIGNAL( 'ValueChanged' )
self.varname = args.get( 'varname', name )
self.ptype = args.get( 'ptype', name )
self.values = args
self.valueKeyList = list( args.keys() )
# self.scaling_bounds = None
@staticmethod
def getParameter( config_name, **args ):
ctype = args.get('ctype')
return ConfigParameter( config_name, **args )
def __str__(self):
return " ConfigParameter[%s]: %s " % ( self.name, str( self.values ) )
def addValueKey( self, key ):
if not (key in self.valueKeyList):
self.valueKeyList.append( key )
def pack( self ):
try:
return ( self.ptype, [ str( self.values[key] ) for key in self.valueKeyList ] )
except KeyError:
print "Error packing parameter %s%s. Values = %s " % ( self.name, str(self.valueKeyList), str(self.values))
def unpack( self, value_strs ):
if len( value_strs ) <> len( self.values.keys() ):
print>>sys.stderr, " Error: parameter structure mismatch in %s ( %d vs %d )" % ( self.name, len( value_strs ), len( self.values.keys() ) ); sys.stderr.flush()
for ( key, str_val ) in zip( self.valueKeyList, value_strs ):
self.values[key] = deserialize_value( str_val )
# print " && Unpack parameter %s: %s " % ( self.name, str( self.values ) ); sys.stdout.flush()
def __len__(self):
return len(self.values)
def __getitem__(self, key):
return self.values.get( key, None )
def __setitem__(self, key, value ):
self.values[key] = value
self.addValueKey( key )
def __call__(self, **args ):
self.values.update( args )
args1 = [ self.ptype ]
for item in args.items():
args1.extend( list(item) )
self.addValueKey( item[0] )
args1.append( self.name )
self.ValueChanged( args1 )
def getName(self):
return self.name
def getVarName(self):
return self.varname
def getParameterType(self):
return self.ptype
def initialize( self, config_str ):
self.values = eval( config_str )
self.sort()
def serialize( self ):
return str( self.values )
def getValue( self, key=0, default_value=None ):
return self.values.get( key, default_value )
def setValue( self, key, val, update=False ):
self.values[ key ] = val
self.addValueKey( key )
if update:
args1 = [ self.ptype, key, val, self.name]
self.ValueChanged( args1 )
def setValues( self, values, update=False ):
for key,value in enumerate( values ):
self.setValue( key, value )
def getValues( self ):
vals = []
for index in range( 0, 100 ):
val = self.getValue( index )
if val == None: break
vals.append( val )
return vals
def incrementValue( self, key, inc = 1 ):
inc_val = self.values[ key ] + inc
self.values[ key ] = inc_val
return inc_val
@property
def rmin(self):
return self['rmin']
@rmin.setter
def rmin(self, value):
self['rmin'] = value
@property
def rmax(self):
return self['rmax']
@rmax.setter
def rmax(self, value):
self['rmax'] = value
# def setScalingBounds( self, sbounds ):
# self.scaling_bounds = sbounds
#
# def getScaledRange(self):
# if self.scaling_bounds:
# ds = self.scaling_bounds[1] - self.scaling_bounds[0]
# return ( self.scaling_bounds[0] + self.rmin * ds, self.scaling_bounds[0] + self.rmax * ds )
# else:
# return self.getRange()
def setRange(self, range ):
self.rmin = range[0] # min( max( range[0], 0.0 ), 1.0 )
self.rmax = range[1] # max( min( range[1], 1.0 ), 0.0 )
def getRange( self ):
return ( self.rmin, self.rmax )
class ConfigurableFunction:
CfgManager = ConfigManager()
ConfigurableFunctions = {}
def __init__( self, name, **args ):
self.name = name
self.persist = args.get( 'persist', True )
self.value = self.CfgManager.addParameter( name, **args )
self.type = 'generic'
self.kwargs = args
self.label = args.get( 'label', self.name )
self.units = args.get( 'units', '' ).strip().lower()
self.key = args.get( 'key', None )
self.state = None
self.initial_value = makeList( args.get( 'initValue', None ), self.getValueLength() )
# self.group = args.get( 'group', ConfigGroup.Display )
self.active = args.get( 'active', True )
self._persisted = True
self.interactionHandler = args.get( 'interactionHandler', None )
def getPosition(self):
return None
def processStateChangeEvent( self, state ):
args = [ "InitConfig", state ]
self.interactionHandler( args, self )
@classmethod
def activate( cls ):
cls.CfgManager.initParameters()
def getValueLength(self):
return 1
def open(self, state ):
self.state = state
def start( self, interactionState, x, y ) :
pass
def close(self) :
self.processInteractionEvent( [ "Close" ] )
def processInteractionEvent( self, args ):
if self.interactionHandler:
self.interactionHandler( args, self )
def init( self, **args ):
if self.interactionHandler:
init_args = [ "Init", args ]
self.interactionHandler( init_args, self )
def get_persisted(self):
return self._persisted if self.persist else True
def updateWindow( self ):
pass
def set_persisted(self, value):
self._persisted = value
#
persisted = property(get_persisted, set_persisted)
def isValid(self):
return True
def hasDataUnits(self):
return ( self.units == 'data' )
def isCompatible( self, config_fn ):
if config_fn and self.matchUnits:
if self.units <> config_fn.units:
return False
return True
def setValue( self, new_parameter_value ):
self.value.setValue( new_parameter_value )
def postInstructions( self, message ):
print "\n ----- %s -------\n" % message
def matches( self, key ):
return self.active and ( self.key == key )
def applyParameter( self, **args ):
pass
def getHelpText( self ):
return "<tr> <td>%s</td> <td>%s</td> <td>%s</td> </tr>\n" % ( self.key, self.label, self.type )
class ConfigurableSliderFunction( ConfigurableFunction ):
def __init__( self, name, **args ):
self.sliderLabels = makeList( args.get( 'sliderLabels', [ 'Range Min', 'Range Max' ] ) )
ConfigurableFunction.__init__( self, name, **args )
self.StartSlidingSignal =SIGNAL('startSliding')
self.UpdateSlidingSignal =SIGNAL('updateSliding')
self.type = 'slider'
self._range_bounds = args.get( 'range_bounds', None )
self._initial_range = None
self.position = args.get( 'position', None )
if self.initial_value <> None:
for index, value in enumerate( self.initial_value ):
self.value.setValue( index, value )
def getPosition(self):
return self.position[0] if self.position else None
def scaleRange( self, scale_factor ):
if self._initial_range == None:
self._initial_range = self._range_bounds
if self._initial_range <> None:
self._range_bounds = [ irv * scale_factor for irv in self._initial_range ]
def getValueLength(self):
return len( self.sliderLabels )
def getRangeBounds(self):
return copy.copy( self._range_bounds )
def setRangeBounds(self, value):
self._range_bounds = copy.copy( value )
def getTitle( dsid, name, attributes, showUnits=False ):
long_name = attributes.get( 'long_name', attributes.get( 'standard_name', name ) )
if not showUnits: return "%s:%s" % ( dsid, long_name )
units = attributes.get( 'units', 'unitless' )
return "%s:%s (%s)" % ( dsid, long_name, units )
def getNewVtkDataArray( scalar_dtype ):
if scalar_dtype == np.ushort:
return vtk.vtkUnsignedShortArray()
if scalar_dtype == np.ubyte:
return vtk.vtkUnsignedCharArray()
if scalar_dtype == np.float32:
return vtk.vtkFloatArray()
if scalar_dtype == np.float64:
return vtk.vtkDoubleArray()
return None
def getFloatStr( val ):
if ( type(val) == type(' ') ): return val
return "%.1f" % val
def getStringDataArray( name, values = [] ):
array = vtk.vtkStringArray()
array.SetName( name )
for value in values:
array.InsertNextValue( value )
return array
def encodeToString( obj ):
rv = None
try:
buffer = StringIO()
pickler = cPickle.Pickler( buffer )
pickler.dump( obj )
rv = buffer.getvalue()
buffer.close()
except Exception, err:
print>>sys.stderr, "Error pickling object %s: %s" % ( str(obj), str(err) )
return rv
def decodeFromString( string_value, default_value=None ):
obj = default_value
try:
buffer = StringIO( string_value )
pickler = cPickle.Unpickler( buffer )
obj = pickler.load()
buffer.close()
except Exception, err:
print>>sys.stderr, "Error unpickling string %s: %s" % ( string_value, str(err) )
return obj
class InputSpecs:
def __init__( self, **args ):
self.units = ''
self.scalarRange = None
self.seriesScalarRange = None
self.rangeBounds = None
self.referenceTimeUnits = None
self.metadata = None
self._input = None
self.fieldData = None
self.datasetId = None
self.clipper = None
self.dtype = None
def isFloat(self):
return self.dtype == "Float"
# def selectInputArray( self, raw_input, plotIndex ):
# self.updateMetadata( plotIndex )
# old_point_data = raw_input.GetPointData()
# nArrays = old_point_data.GetNumberOfArrays()
# if nArrays == 1: return raw_input
# image_data = vtk.vtkImageData()
# image_data.ShallowCopy( raw_input )
# new_point_data = image_data.GetPointData()
# array_index = plotIndex if plotIndex < nArrays else 0
# inputVarList = self.metadata.get( 'inputVarList', [] )
# if array_index < len( inputVarList ):
# aname = inputVarList[ array_index ]
# new_point_data.SetActiveScalars( aname )
# # print "Selecting scalars array %s for input %d" % ( aname, array_index )
# else:
# print>>sys.stderr, "Error, can't find scalars array for input %d" % array_index
# # print "Selecting %s (array-%d) for plot index %d" % ( aname, array_index, plotIndex)
# return image_data
def initializeInput( self, imageData, fieldData, plotIndex=0 ):
self._input = imageData
self.fieldData = fieldData
self.updateMetadata( plotIndex )
def input( self ):
if self.clipper:
input = self.clipper.GetOutput()
input.Update()
return input
return self._input
def clipInput( self, extent ):
self.clipper = vtk.vtkImageClip()
self.clipper.AddInput( self._input )
self.clipper.SetOutputWholeExtent( extent )
def getWorldCoords( self, image_coords ):
plotType = self.metadata[ 'plotType' ]
world_coords = None
try:
if plotType == 'zyt':
lat = self.metadata[ 'lat' ]
lon = self.metadata[ 'lon' ]
timeAxis = self.metadata[ 'time' ]
tval = timeAxis[ image_coords[2] ]
relTimeValue = cdtime.reltime( float( tval ), timeAxis.units )
timeValue = str( relTimeValue.tocomp() )
world_coords = [ getFloatStr(lon[ image_coords[0] ]), getFloatStr(lat[ image_coords[1] ]), timeValue ]
else:
lat = self.metadata[ 'lat' ]
lon = self.metadata[ 'lon' ]
lev = self.metadata[ 'lev' ]
world_coords = [ getFloatStr(lon[ image_coords[0] ]), getFloatStr(lat[ image_coords[1] ]), getFloatStr(lev[ image_coords[2] ]) ]
except:
gridSpacing = self.input().GetSpacing()
gridOrigin = self.input().GetOrigin()
world_coords = [ getFloatStr(gridOrigin[i] + image_coords[i]*gridSpacing[i]) for i in range(3) ]
return world_coords
def getWorldCoordsAsFloat( self, image_coords ):
plotType = self.metadata[ 'plotType' ]
world_coords = None
try:
if plotType == 'zyt':
lat = self.metadata[ 'lat' ]
lon = self.metadata[ 'lon' ]
timeAxis = self.metadata[ 'time' ]
tval = timeAxis[ image_coords[2] ]
relTimeValue = cdtime.reltime( float( tval ), timeAxis.units )
timeValue = str( relTimeValue.tocomp() )
world_coords = [ lon[ image_coords[0] ], lat[ image_coords[1] ], timeValue ]
else:
lat = self.metadata[ 'lat' ]
lon = self.metadata[ 'lon' ]
lev = self.metadata[ 'lev' ]
world_coords = [ lon[ image_coords[0] ], lat[ image_coords[1] ], lev[ image_coords[2] ] ]
except:
gridSpacing = self.input().GetSpacing()
gridOrigin = self.input().GetOrigin()
world_coords = [ gridOrigin[i] + image_coords[i]*gridSpacing[i] for i in range(3) ]
return world_coords
def getWorldCoord( self, image_coord, iAxis, latLonGrid ):
plotType = self.metadata[ 'plotType' ]
if plotType == 'zyt':
axisNames = [ 'Longitude', 'Latitude', 'Time' ] if latLonGrid else [ 'X', 'Y', 'Time' ]
else:
axisNames = [ 'Longitude', 'Latitude', 'Level' ] if latLonGrid else [ 'X', 'Y', 'Level' ]
try:
axes = [ 'lon', 'lat', 'time' ] if plotType == 'zyt' else [ 'lon', 'lat', 'lev' ]
world_coord = self.metadata[ axes[iAxis] ][ image_coord ]
if ( plotType == 'zyt') and ( iAxis == 2 ):
timeAxis = self.metadata[ 'time' ]
timeValue = cdtime.reltime( float( world_coord ), timeAxis.units )
world_coord = str( timeValue.tocomp() )
return axisNames[iAxis], getFloatStr( world_coord )
except:
if (plotType == 'zyx') or (iAxis < 2):
gridSpacing = self.input().GetSpacing()
gridOrigin = self.input().GetOrigin()
return axes[iAxis], getFloatStr( gridOrigin[iAxis] + image_coord*gridSpacing[iAxis] )
return axes[iAxis], ""
def getRangeBounds( self ):
if self.dtype == "Float":
return self.scalarRange
return self.rangeBounds
def getDataRangeBounds(self):
if self.dtype == "Float":
return self.scalarRange
if self.rangeBounds:
srange = self.getDataValues( self.rangeBounds[0:2] )
if ( len( self.rangeBounds ) > 2 ): srange.append( self.rangeBounds[2] )
else: srange.append( 0 )
else: srange = [ 0, 0, 0 ]
return srange
def raiseModuleError( self, msg ):
print>>sys.stderr, msg
raise Exception( msg )
def getDataValue( self, image_value):
if self.isFloat(): return image_value
if not self.scalarRange:
self.raiseModuleError( "ERROR: no variable selected in dataset input to module %s" % getClassName( self ) )
valueRange = self.scalarRange
sval = ( float(image_value) - self.rangeBounds[0] ) / ( self.rangeBounds[1] - self.rangeBounds[0] )
dataValue = valueRange[0] + sval * ( valueRange[1] - valueRange[0] )
# print " GetDataValue(%.3G): valueRange = %s " % ( sval, str( valueRange ) )
return dataValue
def getDataValues( self, image_value_list ):
if self.isFloat(): return image_value_list
if not self.scalarRange:
self.raiseModuleError( "ERROR: no variable selected in dataset input to module %s" % getClassName( self ) )
valueRange = self.scalarRange
dr = ( self.rangeBounds[1] - self.rangeBounds[0] )
data_values = []
for image_value in image_value_list:
sval = 0.0 if ( dr == 0.0 ) else ( image_value - self.rangeBounds[0] ) / dr
dataValue = valueRange[0] + sval * ( valueRange[1] - valueRange[0] )
data_values.append( dataValue )
return data_values
def getImageValue( self, data_value ):
if not self.scalarRange:
self.raiseModuleError( "ERROR: no variable selected in dataset input to module %s" % getClassName( self ) )
valueRange = self.scalarRange
dv = ( valueRange[1] - valueRange[0] )
sval = 0.0 if ( dv == 0.0 ) else ( data_value - valueRange[0] ) / dv
imageValue = self.rangeBounds[0] + sval * ( self.rangeBounds[1] - self.rangeBounds[0] )
return imageValue
def getImageValues( self, data_value_list ):
if self.isFloat(): return data_value_list
if not self.scalarRange:
self.raiseModuleError( "ERROR: no variable selected in dataset input to module %s" % getClassName( self ) )
valueRange = self.scalarRange
dv = ( valueRange[1] - valueRange[0] )
imageValues = []
for data_value in data_value_list:
sval = 0.0 if ( dv == 0.0 ) else ( data_value - valueRange[0] ) / dv
imageValue = self.rangeBounds[0] + sval * ( self.rangeBounds[1] - self.rangeBounds[0] )
imageValues.append( imageValue )
# print "\n ***************** GetImageValues: data_values = %s, range = %s, imageValues = %s **************** \n" % ( str(data_value_list), str(self.scalarRange), str(imageValues) )
return imageValues
def scaleToImage( self, data_value ):
if self.isFloat(): return data_value
if not self.scalarRange:
self.raiseModuleError( "ERROR: no variable selected in dataset input to module %s" % getClassName( self ) )
dv = ( self.scalarRange[1] - self.scalarRange[0] )
sval = 0.0 if ( dv == 0.0 ) else data_value / dv
imageScaledValue = sval * ( self.rangeBounds[1] - self.rangeBounds[0] )
return imageScaledValue
def getMetadata( self, key = None ):
return self.metadata.get( key, None ) if ( key and self.metadata ) else self.metadata
def getFieldData( self ):
if self.fieldData == None:
print>>sys.stderr, ' Uninitialized field data being accessed in ispec[%x] ' % id(self)
self.initializeMetadata()
return self.fieldData
def updateMetadata( self, plotIndex ):
if self.metadata == None:
scalars = None
# arr_names = []
# na = self.fieldData.GetNumberOfArrays()
# for iF in range( na ):
# arr_names.append( self.fieldData.GetArrayName(iF) )
# print " updateMetadata: getFieldData, arrays = ", str( arr_names ) ; sys.stdout.flush()
if self.fieldData == None:
print>>sys.stderr, ' NULL field data in updateMetadata: ispec[%x] ' % id(self)
self.initializeMetadata()
self.metadata = self.computeMetadata( plotIndex )
if self.metadata <> None:
self.rangeBounds = None
self.datasetId = self.metadata.get( 'datasetId', None )
tval = self.metadata.get( 'timeValue', 0.0 )
self.referenceTimeUnits = self.metadata.get( 'timeUnits', None )
self.timeValue = cdtime.reltime( float( tval ), self.referenceTimeUnits ) if tval else None
self.dtype = self.metadata.get( 'datatype', None )
scalars = self.metadata.get( 'scalars', None )
self.rangeBounds = getRangeBounds( self.dtype )
title = self.metadata.get( 'title', None )
if title:
targs = title.split(':')
if len( targs ) == 1:
self.titleBuffer = "\n%s" % ( title )
elif len( targs ) > 1:
self.titleBuffer = "%s\n%s" % ( targs[1], targs[0] )
else: self.titleBuffer = ""
attributes = self.metadata.get( 'attributes' , None )
if attributes:
self.units = attributes.get( 'units' , '' )
srange = attributes.get( 'range', None )
if srange:
# print "\n ***************** ScalarRange = %s, md[%d], var_md[%d] ***************** \n" % ( str(range), id(metadata), id(var_md) )
self.scalarRange = list( srange )
self.scalarRange.append( 1 )
if not self.seriesScalarRange:
self.seriesScalarRange = list(srange)
else:
if self.seriesScalarRange[0] > srange[0]:
self.seriesScalarRange[0] = srange[0]
if self.seriesScalarRange[1] < srange[1]:
self.seriesScalarRange[1] = srange[1]
def getUnits(self):
return self.units
def getLayerList(self):
layerList = []
pointData = self.input().GetPointData()
for iA in range( pointData.GetNumberOfArrays() ):
array_name = pointData.GetArrayName(iA)
if array_name: layerList.append( array_name )
return layerList
def computeMetadata( self, plotIndex=0 ):
if not self.fieldData: self.initializeMetadata()
if self.fieldData:
mdList = extractMetadata( self.fieldData )
if plotIndex < len(mdList):
return mdList[ plotIndex ]
else:
try: return mdList[ 0 ]
except: pass
print>>sys.stderr, "[%s]: Error, Metadata for input %d not found in ispec[%x] " % ( self.__class__.__name__, plotIndex, id(self) )
return {}
def addMetadataObserver( self, caller, event ):
fd = caller.GetOutput().GetFieldData()
fd.ShallowCopy( self.fieldData )
pass
def initializeMetadata( self ):
try:
self.fieldData = vtk.vtkDataSetAttributes()
mdarray = getStringDataArray( 'metadata' )
self.fieldData.AddArray( mdarray )
# diagnosticWriter.log( self, ' initialize field data in ispec[%x] ' % id(self) )
except Exception, err:
print>>sys.stderr, "Error initializing metadata"
def addMetadata( self, metadata ):
dataVector = self.fieldData.GetAbstractArray( 'metadata' )
if dataVector == None:
cname = getClassName( self )
if cname <> "InputSpecs": print " Can't get Metadata for class %s " % cname
else:
enc_mdata = encodeToString( metadata )
dataVector.InsertNextValue( enc_mdata )
def getClassName( instance ):
return instance.__class__.__name__ if ( instance <> None ) else "None"
def bound( val, bounds ): return max( min( val, bounds[1] ), bounds[0] )
def getRangeBounds( type_str ):
if type_str == 'UShort':
return [ 0, 65535, 1 ]
if type_str == 'UByte':
return [ 0, 255, 1 ]
if type_str == 'Float':
f = np.finfo(float)
return [ -f.max, f.max, 1 ]
return None
def extractMetadata( fieldData ):
mdList = []
inputVarList = []
varlist = fieldData.GetAbstractArray( 'varlist' )
if varlist == None: # module.getFieldData()
print>>sys.stderr, " Can't get Metadata!"
else:
nvar = varlist.GetNumberOfValues()
for vid in range(nvar):
varName = str( varlist.GetValue(vid) )
inputVarList.append( varName )
dataVector = fieldData.GetAbstractArray( 'metadata:%s' % varName )
if dataVector == None:
print>>sys.stderr, " Can't get Metadata for var %s!" % varName
else:
metadata = {}
nval = dataVector.GetNumberOfValues()
for id in range(nval):
enc_mdata = str( dataVector.GetValue(id) )
md = decodeFromString( enc_mdata )
metadata.update( md )
mdList.append( metadata )
for md in mdList: md['inputVarList'] = inputVarList
return mdList