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index.html
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<!DOCTYPE HTML>
<!--
Editorial by HTML5 UP
html5up.net | @ajlkn
Free for personal and commercial use under the CCA 3.0 license (html5up.net/license)
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<html>
<head>
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<title>Jin Cui</title>
<meta charset="utf-8" />
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<link rel="stylesheet" href="assets/css/main.css" />
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<!-- Header -->
<header id="header">
<!----<a href="index.html" class="logo"><strong>Welcome</strong> To My Website : )</a> -->
<ul class="icons">
<li><a href="https://www.linkedin.com/in/cjinny/" target="_blank" class="icon fa-linkedin"><span class="label">LinkedIn</span></a></li>
<li><a href="https://github.com/CJinny" target="_blank" class="icon fa-github"><span class="label">Github</span></a></li>
<li><a href="https://kaggle.com/cjinny" target="_blank" class="fa-kaggle"><span class="label">Kaggle</span></a></li>
</ul>
</header>
<!-- Banner -->
<section id="banner">
<div class="content">
<header>
<h1>Welcome to Jin Cui's website!</h1>
<!-- <p>Machine learning practioner</p> -->
</header>
<p>
Hi there! My name is Jin Cui, and I'm excited about Data Science. </br>
</p>
<p>
I got my Bachelor's degree in Plant Biotechnology from China and started my PhD degree with the expectation of
becoming a molecular biologist.
However, as years passed I started to learn Bioinformatics and explore various Data
Science tools, I have become addicted with data and quickly taught myself a lot of Data Science skills.
</p>
<p>
I have finished my PhD degree in <b style="color:#58ACFA">Plant Biology</b> from <b
style="color:#58ACFA">Pennsylvania State University</b> and I'm currently a <b style="color:#58ACFA">Health Data Science Fellow</b> at
<a href="https://www.insighthealthdata.com/" target="_blank" > <b style="color:#58ACFA">Insight Data Science Program</b></a>.
I'm exposed to various machine learning/data science/bioinformatics tools, and also have strong programming
skills in <b style="color:#58ACFA">Python</b>, <b style="color:#58ACFA">R</b> and <b style="color:#58ACFA">Linux</b>.<br />
</p>
<ul class="actions">
<li><a href="https://drive.google.com/file/d/1XEDraiFqlYJaJL5R9kI55w_6Kfg9Nxtd/view?usp=sharing" target="_blank" class="button big">My
Resume</a></li>
</ul>
</div>
<span class="image object">
<img src="images/great_wall.jpg" alt="" />
</span>
</section>
<!-- Section -->
<section>
<header class="major">
<h2>Who I am</h2>
</header>
<div class="features">
<article>
<span class="icon fa-database"></span>
<div class="content">
<h3>Data scientist</h3>
<p>I love Data Science, and I'm eager to apply machine/deep learning to solve business problems.</p>
</div>
</article>
<article>
<span class="icon fa-diamond"></span>
<div class="content">
<h3>Kaggle expert</h3>
<p>I'm actively participating in Kaggle competitions and learning new skills. I currently have one solo silver
and two team silvers. </p>
</div>
</article>
<article>
<span class="icon fa-bug"></span>
<div class="content">
<h3>Bioinformatician</h3>
<p>I'm exposed to many bioinformatics software and tools. I have a broad experience in NGS analysis and data
visualization. </p>
</div>
</article>
<article>
<span class="icon fa-leaf"></span>
<div class="content">
<h3>Plant biologist</h3>
<p>I have five years experience managing corn populations in both field and greenhouse. I also have extensive
molecular biology skills. </p>
</div>
</article>
</div>
</section>
<!-- Section -->
<section id="project">
<header class="major">
<h2>Featured work</h2>
</header>
<div class="posts">
<article>
<a href="https://medium.com/@jincui_32383/firecaster-93465e719d55" target="_blank" class="image"><img src="https://github.com/CJinny/portfolio/raw/master/images/dNBR.gif"
alt="" style="display: block" /></a>
<h3>FireCaster: help animal rescue team save animal lives</h3>
<p>Deep learning model to forecast bushfire damage risk on Flinders Chase National Park using satellite imagery and weather data<br>
<b>Three week project at Insight Data Science</b> </br>
<b style="color:#58ACFA">[Time-series, Computer Vision, Keras, Satellite Imagery, BigQuery] </b></p>
<ul class="actions">
<li><a href="https://github.com/CJinny/insight_project_firecaster" target="_blank" class="button">GitHub</a></li>
<li><a href="https://github.com/CJinny/PCircos" target="_blank" class="button">Dash App</a></li>
<li><a href="https://medium.com/@jincui_32383/firecaster-93465e719d55" target="_blank" class="button">Medium</a></li>
</ul>
</article>
<article>
<a href="https://github.com/CJinny/PCircos" target="_blank" class="image"><img src="images/plotly circos.png"
alt="" /></a>
<h3>Plotly Circos</h3>
<p>An open-source software that helps visualize NGS sequencing data with ease. </br>
Live demo is down for maintenance.</br>
<b>Beginner-friendly Bioinformatics Data Visualization Tool </b><br>
<b style="color:#58ACFA">[Data Visualization, Plotly, Dash, React, Docker]</b></br>
<ul class="actions">
<li><a href="https://github.com/CJinny/PCircos" target="_blank" class="button">Github</a></li>
<li><a href="https://colab.research.google.com/drive/1GIkZojmWbMou3wGjoSZ57YZvXtZJnY3G#scrollTo=zOTa64ei7Y1o"
target="_blank" class="button">Colab Demo</a></li>
<li><a href="https://dash-circos-app.herokuapp.com/" target="_blank" class="button">Dash App</a></li>
</ul>
</article>
<article>
<a href="images/poster_final.pdf" target="_blank" class="image"><img src="images/ufo1_poster.png" alt="" /></a>
<h3>Maize <i>Unstable factor for orange1 </i></h3>
<p>My PhD research on an epigentic modifier in maize. I'm a co-first author on a published paper and my
contribution includes molecular cloning, generation of transgenic plants, real-time PCR and RNA-seq analysis.
</br> <b>PhD Research </b></br>
<b style="color:#58ACFA">[Thesis Research, Plant breeding, Molecular Cloning, RNA-seq]</b></p>
<ul class="actions">
<li><a href="http://www.plantcell.org/content/plantcell/30/12/3006.full.pdf" target="_blank" class="button">Publication</a></li>
<li><a href="images/poster_final.pdf" target="_blank" class="button">Poster</a></li>
</ul>
</article>
<article>
<a href="http://htmlpreview.github.io/?https://github.com/CJinny/RNA-seq-tutorial/blob/master/RNAseq_tutorial.html"
target="_blank" class="image"><img src="images/rnaseq_comp.png" alt="" /></a>
<h3>Tutorial on RNA-seq data analysis</h3>
<p>Reproducible RNA-seq differential expression analysis pipeline</br> </b><b>Beginner-friendly RNA-seq tutorial</b></br>
<b style="color:#58ACFA">[RNA-seq, R Markdown, PCA, DESeq, DESeq2, edgeR, limma]</b> </p>
<ul class="actions">
<li><a href="https://github.com/CJinny/RNA-seq-tutorial/tree/master" target="_blank" class="button">Github</a></li>
<li><a href="http://htmlpreview.github.io/?https://github.com/CJinny/RNA-seq-tutorial/blob/master/RNAseq_tutorial.html"
target="_blank" class="button">Markdown</a></li>
</ul>
</article>
<article>
<a href="https://github.com/CJinny/USTrafficAccidentMarch2015-March2019" target="_blank" class="image"><img src="images/Shiny_App.png"
alt="" /></a>
<h3>US traffic accident map </h3>
<p>Traffic Accident in the US from March 2015 - March 2019</br> </b><b>Shiny interactive map</b></br>
<b style="color:#58ACFA">[Data Visualization, R Shiny, shinydashboard, Leaflet]</b> </p>
<ul class="actions">
<li><a href="https://github.com/CJinny/RNA-seq-tutorial/tree/master" target="_blank" class="button">Github</a></li>
<li><a href="https://cjinny92.shinyapps.io/USTrafficAccidentMarch2015-March2019/" target="_blank" class="button">Shiny
App</a></li>
</ul>
</article>
<article>
<a href="https://www.kaggle.com/c/jigsaw-unintended-bias-in-toxicity-classification" target="_blank" class="image"><img
src="images/jigsaw_toxic.png" alt="" /></a>
<h3>Kaggle Competition: Toxicity Classification</h3>
<p>Build classfication models to predict toxic comments while minimizing bias.</br> <b>Top 1%, Team Silver </b></br>
<b style="color:#58ACFA">[Kaggle, NLP, PyTorch, Bert, GPT-2, Bi-LSTM]</b></p>
<ul class="actions">
<li><a href="https://github.com/CJinny/Kaggle-Jigsaw-Unintended-Bias-in-Toxicity-Classification" target="_blank"
class="button">Github</a></li>
</ul>
</article>
<article>
<a href="https://www.kaggle.com/c/elo-merchant-category-recommendation" target="_blank" class="image"><img src="images/elo.png"
alt="" /></a>
<h3>Kaggle Competition: Elo Merchant Category Recommendation</h3>
<p>Build models on unbalanced data to predict customer loyalty score.</br> <b>Top 3%, Solo Silver </b></br>
<b style="color:#58ACFA">[Kaggle, Feature Engineering, Hyperparameter Tuning, lightgbm]</b> </p>
<ul class="actions">
<li><a href="https://github.com/CJinny/Kaggle-Elo-Merchant-Category-Recommendation" target="_blank" class="button">GitHub</a></li>
</ul>
</article>
<article>
<a href="https://www.kaggle.com/c/aptos2019-blindness-detection" target="_blank" class="image"><img src="images/APTOS.png"
alt="" /></a>
<h3>Kaggle Competition: APTOS 2019 Blindness Detection</h3>
<p>Build models on eye images to predict diabetic retinopathy.</br> <b>Top 4%, Team Silver </b></br>
<b style="color:#58ACFA">[Kaggle, Image Classfication, EfficientNet, Image Augmentation]</b></p>
<ul class="actions">
<li><a href="https://github.com/CJinny/Kaggle-aptos" target="_blank" class="button">GitHub</a></li>
</ul>
</article>
</div>
</section>
</div>
</div>
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<input type="text" name="query" id="query" placeholder="Search" />
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</section>-->
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<nav id="menu">
<header class="major">
<h2>Menu</h2>
</header>
<ul>
<li><a href="index.html">About Me</a></li>
<li><a href="#project">Featured Work</a></li>
</ul>
</nav>
<!-- Section -->
<section>
<header class="major">
<h2>Contact Me</h2>
</header>
<p>I'd love to talk about Data Science and Bioinformatics jobs in the future, please don't hesitate to contact me
:)</p>
<ul class="contact">
<li class="fa-envelope"><a href="https://cuijinjincui4@gmail.com">cuijinjincui4@gmail.com</a></li>
<li class="fa-phone">(814) 777-5795</li>
<li class="fa-home">Boston, MA, 02125</li>
</ul>
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<p class="copyright">© Jin Cui. All rights reserved</a>. Design: <a href="https://html5up.net">HTML5 UP</a>.</p>
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