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Insert OboGraph functionality from ARCValidation #17

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omaus opened this issue Sep 8, 2023 · 4 comments
Open

Insert OboGraph functionality from ARCValidation #17

omaus opened this issue Sep 8, 2023 · 4 comments
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Type: Feature Request This item is confirmed by the maintainers to be a request for a new feature

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@omaus
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omaus commented Sep 8, 2023

ARCValidation library has functions to transform OboOntology type into respective FGraph (from Graphoscope). Move that from there to this repo but in its own project (FsOboGraph).

See also nfdi4plants/arc-validate#56

@kMutagene
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@omaus do you want to tackle this next after #32 is done?

@omaus
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omaus commented May 2, 2024

@kMutagene Yeah, sure. 😃

@omaus
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omaus commented May 7, 2024

Additional:

  • either CvTerm instead of OboTerm as NodeData or (maybe even better) Accession or (maybe best) OboTerm option
  • generalize TermRelation (if needed)
    • needs equivalent relationship but ONLY applies if in document header xrefs are treated as equivalent

@kMutagene
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kMutagene commented May 8, 2024

(maybe even better) Accession

make sure to change the Node Key to the accession though

@omaus omaus added the Type: Feature Request This item is confirmed by the maintainers to be a request for a new feature label Jun 5, 2024
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