README.md

Action Potential prediction (ApPredict) in containers - AP-Nimbus!

ApPredict performs simulations of drug-induced changes to the cardiac action potential to support the CiPA initiative.

This activity is a continuation of the ap_predict_online work -- the aim being to containerise the AP-Portal.

We're working on the documentation side of things at https://ap-nimbus.readthedocs.io/

Current/Active work :

app-manager application-invoking "REST" API

node.js application which invokes the simulation software, ApPredict, monitors its progress, and returns the results to the calling client (usually client-direct).

See: https://hub.docker.com/r/cardiacmodelling/ap-nimbus-app-manager

appredict-docker ApPredict in containers

appredict-chaste-libs ApPredict's dependencies.

ApPredict's prerequisite libraries (e.g. Boost, PETSc, HDF5, etc.). The foundation upon which ApPredict can be built and run.

See: https://hub.docker.com/r/cardiacmodelling/appredict-chaste-libs

appredict-no-emulators C++ Cardiac modelling software (without emulators).

ApPredict without uncertainty emulators, i.e. they'll be downloaded (using wget) in real-time if required.

See: https://hub.docker.com/r/cardiacmodelling/appredict-no-emulators

appredict-with-emulators C++ Cardiac modelling software with emulators.

ApPredict with uncertainty emulators preinstalled. Helpful if using the container behind a corporate proxy.

See: https://hub.docker.com/r/cardiacmodelling/appredict-with-emulators

client-direct web interface

Submodule containing re-developed Django UI

See: https://hub.docker.com/r/cardiacmodelling/ap-nimbus-client-direct

Discontinued/Archived work :

ap-nimbus-azure-durable-functions

Test application for Azure durable function invocation of ApPredict.

https://github.com/CardiacModelling/ap-nimbus-azure-durable-functions

ap-nimbus-datastore Data store.

Mongo-based microservice database (for use with app-manager and client-direct).

https://github.com/CardiacModelling/ap-nimbus-datastore

ap-nimbus-deploy Container orchestration

Docker compose, swarm configs and kubernetes testing.

https://github.com/CardiacModelling/ap-nimbus-deploy