-
Notifications
You must be signed in to change notification settings - Fork 55
/
jobs.py
547 lines (436 loc) · 19.8 KB
/
jobs.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
import re
import signal
import threading
import enum
import itertools
import logging
import traceback
import types
from contextlib import contextmanager
from model_utils import Choices
from django.conf import settings
from django.db import connection
from django.db import connections
from django.db import models
from django.db import transaction
from django.db import IntegrityError
from django.db.models.expressions import RawSQL
from django.utils import timezone
from django.utils.translation import ugettext_lazy as _
from share.util import chunked, BaseJSONAPIMeta
from share.models.fields import DateTimeAwareJSONField
__all__ = ('HarvestJob', 'IngestJob', 'RegulatorLog')
logger = logging.getLogger(__name__)
def get_share_version():
return settings.VERSION
class AbstractJobManager(models.Manager):
_bulk_tmpl = '''
INSERT INTO "{table}"
({insert})
VALUES
{{values}}
ON CONFLICT
({constraint})
DO UPDATE SET
id = "{table}".id
RETURNING {fields}
'''
_bulk_tmpl_nothing = '''
INSERT INTO "{table}"
({insert})
VALUES
{{values}}
ON CONFLICT ({constraint})
DO NOTHING
RETURNING {fields}
'''
def get_queryset(self):
return LockableQuerySet(self.model, using=self._db)
def bulk_create_or_nothing(self, fields, data, db_alias='default'):
default_fields, default_values = self._build_defaults(fields)
query = self._bulk_tmpl_nothing.format(
table=self.model._meta.db_table,
fields=', '.join('"{}"'.format(field.column) for field in self.model._meta.concrete_fields),
insert=', '.join('"{}"'.format(self.model._meta.get_field(field).column) for field in itertools.chain(fields + default_fields)),
constraint=', '.join('"{}"'.format(self.model._meta.get_field(field).column) for field in self.model._meta.unique_together[0]),
)
return self._bulk_query(query, default_values, data, db_alias)
def bulk_create_or_get(self, fields, data, db_alias='default'):
default_fields, default_values = self._build_defaults(fields)
query = self._bulk_tmpl.format(
table=self.model._meta.db_table,
fields=', '.join('"{}"'.format(field.column) for field in self.model._meta.concrete_fields),
insert=', '.join('"{}"'.format(self.model._meta.get_field(field).column) for field in itertools.chain(fields + default_fields)),
constraint=', '.join('"{}"'.format(self.model._meta.get_field(field).column) for field in self.model._meta.unique_together[0]),
)
return self._bulk_query(query, default_values, data, db_alias)
def bulk_get_or_create(self, objs, defaults=None, using='default'):
if len(self.model._meta.unique_together) != 1:
raise ValueError('Cannot determine the constraint to use for ON CONFLICT')
if not objs:
return []
columns = []
defaults = defaults or {}
for field in self.model._meta.concrete_fields:
if field is not self.model._meta.pk:
columns.append(field.column)
if field in defaults:
continue
if field.default is not models.NOT_PROVIDED or field.null:
defaults[field] = field._get_default()
elif isinstance(field, models.DateField) and (field.auto_now or field.auto_now_add):
defaults[field] = timezone.now()
if any(obj.pk for obj in objs):
raise ValueError('Cannot bulk_get_or_create objects with primary keys')
constraint = ', '.join('"{1.column}"'.format(self.model, self.model._meta.get_field(field)) for field in self.model._meta.unique_together[0])
loaded = []
with transaction.atomic(using):
for chunk in chunked(objs, 500):
if not chunk:
break
loaded.extend(self.raw('''
INSERT INTO "{model._meta.db_table}"
({columns})
VALUES
{values}
ON CONFLICT
({constraint})
DO UPDATE SET
id = "{model._meta.db_table}".id
RETURNING *
'''.format(
model=self.model,
columns=', '.join(columns),
constraint=constraint,
values=', '.join(['%s'] * len(chunk)),
), [
tuple(getattr(obj, field.attname, None) or defaults[field] for field in self.model._meta.concrete_fields[1:])
for obj in chunk
]))
return loaded
def _bulk_query(self, query, default_values, data, db_alias):
fields = [field.name for field in self.model._meta.concrete_fields]
with connection.cursor() as cursor:
for chunk in chunked(data, 500):
if not chunk:
break
cursor.execute(query.format(
values=', '.join('%s' for _ in range(len(chunk))), # Nasty hack. Fix when psycopg2 2.7 is released with execute_values
), [c + default_values for c in chunk])
for row in cursor.fetchall():
yield self.model.from_db(db_alias, fields, row)
def _build_defaults(self, fields):
default_fields, default_values = (), ()
for field in self.model._meta.concrete_fields:
if field.name in fields:
continue
if not field.null and field.default is not models.NOT_PROVIDED:
default_fields += (field.name, )
if isinstance(field.default, types.FunctionType):
default_values += (field.default(), )
else:
default_values += (field.default, )
if isinstance(field, models.DateTimeField) and (field.auto_now or field.auto_now_add):
default_fields += (field.name, )
default_values += (timezone.now(), )
return default_fields, default_values
class AbstractBaseJob(models.Model):
STATUS = Choices(
(0, 'created', _('Enqueued')),
(1, 'started', _('In Progress')),
(2, 'failed', _('Failed')),
(3, 'succeeded', _('Succeeded')),
(4, 'rescheduled', _('Rescheduled')),
# Used to be "defunct" which turnout to be defunct
# Removed to avoid confusion but number has been left the same for backwards compatibility
(6, 'forced', _('Forced')),
(7, 'skipped', _('Skipped')),
(8, 'retried', _('Retrying')),
(9, 'cancelled', _('Cancelled')),
)
READY_STATUSES = (
STATUS.created,
STATUS.started,
STATUS.rescheduled,
STATUS.cancelled,
)
class SkipReasons(enum.Enum):
duplicated = 'Previously Succeeded'
encompassed = 'Encompassing task succeeded'
comprised = 'Comprised of succeeded tasks'
pointless = 'Any effects will be overwritten by another queued job'
obsolete = 'Uses an old version of a dependency'
task_id = models.UUIDField(null=True)
status = models.IntegerField(db_index=True, choices=STATUS, default=STATUS.created)
claimed = models.NullBooleanField()
error_type = models.TextField(blank=True, null=True, db_index=True)
error_message = models.TextField(blank=True, null=True, db_column='message')
error_context = models.TextField(blank=True, default='', db_column='context')
completions = models.IntegerField(default=0)
date_started = models.DateTimeField(null=True, blank=True)
date_created = models.DateTimeField(auto_now_add=True, editable=False)
date_modified = models.DateTimeField(auto_now=True, editable=False, db_index=True)
share_version = models.TextField(default=get_share_version, editable=False)
objects = AbstractJobManager()
class JSONAPIMeta(BaseJSONAPIMeta):
pass
class Meta:
abstract = True
ordering = ('-date_modified', )
def start(self, claim=False):
# TODO double check existing values to make sure everything lines up.
stamp = timezone.now()
logger.debug('Setting %r to started at %r', self, stamp)
self.status = self.STATUS.started
self.claimed = claim
self.date_started = stamp
self.save(update_fields=('status', 'claimed', 'date_started', 'date_modified'))
return True
def fail(self, exception):
logger.debug('Setting %r to failed due to %r', self, exception)
self.error_message = exception
if isinstance(exception, Exception):
self.error_type = type(exception).__name__
tb = traceback.TracebackException.from_exception(exception)
self.error_context = '\n'.join(tb.format(chain=True))
else:
self.error_type = None
self.error_context = ''
self.status = self.STATUS.failed
self.claimed = False
self.save(update_fields=('status', 'error_type', 'error_message', 'error_context', 'claimed', 'date_modified'))
return True
def succeed(self):
self.error_type = None
self.error_message = None
self.error_context = ''
self.claimed = False
self.completions += 1
self.status = self.STATUS.succeeded
logger.debug('Setting %r to succeeded with %d completions', self, self.completions)
self.save(update_fields=('status', 'error_type', 'error_message', 'error_context', 'completions', 'claimed', 'date_modified'))
return True
def reschedule(self, claim=False):
self.status = self.STATUS.rescheduled
self.claimed = claim
self.save(update_fields=('status', 'claimed', 'date_modified'))
return True
def forced(self, exception):
logger.debug('Setting %r to forced with error_context %r', self, exception)
self.error_message = exception
if isinstance(exception, Exception):
self.error_type = type(exception).__name__
tb = traceback.TracebackException.from_exception(exception)
self.error_context = '\n'.join(tb.format(chain=True))
else:
self.error_type = None
self.error_context = ''
self.status = self.STATUS.forced
self.claimed = False
self.save(update_fields=('status', 'error_type', 'error_message', 'error_context', 'claimed', 'date_modified'))
return True
def skip(self, reason):
logger.debug('Setting %r to skipped with context %r', self, reason)
self.completions += 1
self.error_context = reason.value
self.status = self.STATUS.skipped
self.claimed = False
self.save(update_fields=('status', 'error_context', 'completions', 'claimed', 'date_modified'))
return True
def cancel(self):
logger.debug('Setting %r to cancelled', self)
self.status = self.STATUS.cancelled
self.claimed = False
self.save(update_fields=('status', 'claimed', 'date_modified'))
return True
@contextmanager
def handle(self):
# Flush any pending changes. Any updates
# beyond here will be field specific
self.save()
is_main_thread = threading.current_thread() == threading.main_thread()
if is_main_thread:
# Protect ourselves from SIGTERM
def on_sigterm(sig, frame):
self.cancel()
prev_handler = signal.signal(signal.SIGTERM, on_sigterm)
self.start()
try:
yield
except Exception as e:
self.fail(e)
raise
else:
# If the handler didn't handle setting a status, assume success
if self.status == self.STATUS.started:
self.succeed()
finally:
if is_main_thread:
# Detach from SIGTERM, resetting the previous handle
signal.signal(signal.SIGTERM, prev_handler)
def current_versions(self):
raise NotImplementedError
def update_versions(self):
"""Update version fields to the values from self.current_versions
Return True if successful, else False.
"""
current_versions = self.current_versions()
if all(getattr(self, f) == v for f, v in current_versions.items()):
# No updates required
return True
if self.completions > 0:
logger.warning('%r is outdated but has previously completed, skipping...', self)
return False
try:
with transaction.atomic():
for f, v in current_versions.items():
setattr(self, f, v)
self.save()
logger.warning('%r has been updated to the versions: %s', self, current_versions)
return True
except IntegrityError:
logger.warning('A newer version of %r already exists, skipping...', self)
return False
def __repr__(self):
return '<{} {} ({})>'.format(self.__class__.__name__, self.id, self.STATUS[self.status])
class PGLock(models.Model):
"""A wrapper around Postgres' pg_locks system table.
manged = False stops this model from doing anything strange to the table
but allows us to safely query this table.
"""
pid = models.IntegerField(primary_key=True)
locktype = models.TextField()
objid = models.IntegerField()
classid = models.IntegerField()
class Meta:
managed = False
db_table = 'pg_locks'
class LockableQuerySet(models.QuerySet):
LOCK_ACQUIRED = re.sub('\s\s+', ' ', '''
pg_try_advisory_lock(%s::REGCLASS::INTEGER, "{0.model._meta.db_table}"."{0.column}")
''').strip()
def unlocked(self, relation):
"""Filter out any rows that have an advisory lock on the related field.
Args:
relation: (str): The related object to check for an advisory lock on.
"""
field = self.model._meta.get_field(relation)
if not field.is_relation:
raise ValueError('Field "{}" of "{}" is not a relation'.format(relation, self.model))
return self.select_related(relation).annotate(
is_locked=models.Exists(PGLock.objects.filter(
locktype='advisory',
objid=models.OuterRef(field.column),
classid=RawSQL('%s::REGCLASS::INTEGER', [field.related_model._meta.db_table])
))
).exclude(is_locked=True)
@contextmanager
def lock_first(self, relation):
item = None
field = self.model._meta.get_field(relation)
if not field.is_relation:
raise ValueError('Field "{}" of "{}" is not a relation'.format(relation, self.model))
try:
item = type(self)(self.model, using=self.db).select_related(relation).filter(
id__in=self.values('id')[:1]
).annotate(
lock_acquired=RawSQL(self.LOCK_ACQUIRED.format(field), [field.related_model._meta.db_table])
).first()
yield item
finally:
if item and item.lock_acquired:
with connections[self.db].cursor() as cursor:
cursor.execute('SELECT pg_advisory_unlock(%s::REGCLASS::INTEGER, %s)', [field.related_model._meta.db_table, getattr(item, field.attname)])
def acquire_lock(self, relation):
"""Attempts to acquire an advisory lock for ALL rows returned by this queryset.
Note:
Locks not take effect until the queryset is evaluated.
It will, however, affect everything if you use .all().
Args:
relation: (str): The related object to attempt to acquire an advisory lock on.
"""
field = self.model._meta.get_field(relation)
if not field.is_relation:
raise ValueError('Field "{}" of "{}" is not a relation'.format(relation, self.model))
return self.select_related(relation).annotate(
lock_acquired=RawSQL(self.LOCK_ACQUIRED.format(field), [field.related_model._meta.db_table])
)
class HarvestJob(AbstractBaseJob):
# May want to look into using DateRange in the future
end_date = models.DateField(db_index=True)
start_date = models.DateField(db_index=True)
source_config = models.ForeignKey('SourceConfig', editable=False, related_name='harvest_jobs', on_delete=models.CASCADE)
source_config_version = models.PositiveIntegerField()
harvester_version = models.PositiveIntegerField()
class Meta:
unique_together = ('source_config', 'start_date', 'end_date', 'harvester_version', 'source_config_version', )
# Used to be inaccurately named
db_table = 'share_harvestlog'
def current_versions(self):
return {
'source_config_version': self.source_config.version,
'harvester_version': self.source_config.harvester.version,
}
def __repr__(self):
return '<{type}({id}, {status}, {source}, {start_date}, {end_date})>'.format(
type=type(self).__name__,
id=self.id,
source=self.source_config.label,
status=self.STATUS[self.status],
end_date=self.end_date.isoformat(),
start_date=self.start_date.isoformat(),
)
class IngestJob(AbstractBaseJob):
raw = models.ForeignKey('RawDatum', editable=False, related_name='ingest_jobs', on_delete=models.CASCADE)
suid = models.ForeignKey('SourceUniqueIdentifier', editable=False, related_name='ingest_jobs', on_delete=models.CASCADE)
source_config = models.ForeignKey('SourceConfig', editable=False, related_name='ingest_jobs', on_delete=models.CASCADE)
source_config_version = models.PositiveIntegerField()
transformer_version = models.PositiveIntegerField()
regulator_version = models.PositiveIntegerField()
transformed_datum = DateTimeAwareJSONField(null=True)
regulated_datum = DateTimeAwareJSONField(null=True)
ingested_normalized_data = models.ManyToManyField('NormalizedData', related_name='ingest_jobs')
retries = models.IntegerField(null=True)
@classmethod
def schedule(cls, raw, superfluous=False, claim=False):
# TODO does this belong here?
from share.regulate import Regulator
job, _ = cls.objects.get_or_create(
raw=raw,
suid=raw.suid,
source_config=raw.suid.source_config,
source_config_version=raw.suid.source_config.version,
transformer_version=raw.suid.source_config.transformer.version,
regulator_version=Regulator.VERSION,
claimed=claim,
)
if superfluous and job.status not in cls.READY_STATUSES:
job.status = cls.STATUS.created
job.save()
return job
class Meta:
unique_together = ('raw', 'source_config_version', 'transformer_version', 'regulator_version')
def current_versions(self):
# TODO does this belong here?
from share.regulate import Regulator
return {
'source_config_version': self.source_config.version,
'transformer_version': self.source_config.transformer.version,
'regulator_version': Regulator.VERSION,
}
def log_graph(self, field_name, graph):
setattr(self, field_name, graph.to_jsonld())
self.save(update_fields=(field_name, 'date_modified'))
def __repr__(self):
return '<{type}({id}, {status}, {source}, {suid})>'.format(
type=type(self).__name__,
id=self.id,
status=self.STATUS[self.status],
source=self.source_config.label,
suid=self.suid.identifier,
)
class RegulatorLog(models.Model):
description = models.TextField()
node_id = models.TextField(null=True)
rejected = models.BooleanField()
ingest_job = models.ForeignKey(IngestJob, related_name='regulator_logs', editable=False, on_delete=models.CASCADE)