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HPOSet

HPOSet instances contains a set of HPO terms. This class is useful to represent a patient's clinical information.

It provides analytical helper functions to narrow down the actual provided clinical information.

HPOSet class

.. autoclass:: pyhpo.set.HPOSet
   :no-private-members:
   :no-special-members:

child_nodes

.. automethod:: pyhpo.set.HPOSet.child_nodes

remove_modifier

.. automethod:: pyhpo.set.HPOSet.remove_modifier

replace_obsolete

.. automethod:: pyhpo.set.HPOSet.replace_obsolete

all_genes

.. automethod:: pyhpo.set.HPOSet.all_genes

omim_diseases

.. automethod:: pyhpo.set.HPOSet.omim_diseases

information_content

.. automethod:: pyhpo.set.HPOSet.information_content

variance

.. automethod:: pyhpo.set.HPOSet.variance

combinations

.. automethod:: pyhpo.set.HPOSet.combinations

combinations_one_way

.. automethod:: pyhpo.set.HPOSet.combinations_one_way

similarity

.. automethod:: pyhpo.set.HPOSet.similarity

toJSON

.. automethod:: pyhpo.set.HPOSet.toJSON

serialize

.. automethod:: pyhpo.set.HPOSet.serialize

BasicHPOSet class

.. autoclass:: pyhpo.set.BasicHPOSet
   :no-private-members:
   :no-special-members:

Class methods

from_queries

.. automethod:: pyhpo.set.HPOSet.from_queries

from_serialized

.. automethod:: pyhpo.set.HPOSet.from_serialized