The parser section contains functions to parse the master data, such as hpo.obo and phenotype... files. These methods should mostly be left untouched and there is very little need for client-side code to interact with these methods. The documentation here is mostly for developers of the library.
pyhpo.parser.build_ontology_annotations
pyhpo.parser.generics.id_from_string
pyhpo.parser.generics.remove_outcommented_rows
pyhpo.parser.diseases.add_decipher_to_term
pyhpo.parser.diseases.add_negative_decipher_to_term
pyhpo.parser.diseases.add_omim_to_term
pyhpo.parser.diseases.add_negative_omim_to_term
pyhpo.parser.diseases.add_orpha_to_term
pyhpo.parser.diseases.add_negative_orpha_to_term
pyhpo.parser.diseases.all_decipher_diseases
pyhpo.parser.diseases.all_omim_diseases
pyhpo.parser.diseases.all_orpha_diseases
pyhpo.parser.genes.add_gene_to_term
pyhpo.parser.genes.all_genes
pyhpo.parser.obo.terms_from_file
pyhpo.parser.obo.parse_obo_section